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Oryza sativa QTL "AQBJ014" (large vascular bundle number)
| QTL Accession ID | AQBJ014 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | LVBNB |
| Trait Name | large vascular bundle number |
| Published Symbol | qNVB-12-1 |
| Trait Synonym(s) |
LVB number of large vascular bundles |
| Trait Category | Anatomy |
| Chromosome | 12 |
| Comments | QTL was detected using the experiment data of 1997. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 4,053,131-4,103,357 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 12 | 54-68.2 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBJ014 | 12 | 54 | 68.2 |
Associated Markers (7)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R367 | RFLP | Oryza sativa | qtl_marker |
| To | G124 | RFLP | Oryza sativa | qtl_marker |
| To | C3029S | RFLP | Oryza sativa | qtl_marker |
| To | G189 | RFLP | Oryza sativa | qtl_marker |
| To | R3375 | RFLP | Oryza sativa | qtl_marker |
| To | C718 | RFLP | Oryza sativa | qtl_marker |
| To | R1957 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000539) | Sasahara-H et al., 1999 (IAGP) |
| Plant Structure | (PO:0000034) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Sasahara-H et al., 1999 (SM) |
Database Cross-References (1)
SNPs (110)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 4,053,131 | 4,103,357 | ~160K SNPs x 20 accessions (McNally 2... | 46 | Search for SNPs |
| chr12 | 4,053,131 | 4,103,357 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr12 | 4,053,131 | 4,103,357 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
| chr12 | 4,053,131 | 4,103,357 | Huang X, et al, Nat Genetics 2010 Nov... | 30 | Search for SNPs |
| chr12 | 4,053,131 | 4,103,357 | RiceDiversity 44K SNP assay, 34 trait... | 30 | Search for SNPs |
| chr12 | 4,053,131 | 4,103,357 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
