QTL Accession ID | AQBJ005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LVBNB |
Trait Name | large vascular bundle number |
Published Symbol | qNVB-11-1 |
Trait Synonym(s) |
LVB number of large vascular bundles |
Trait Category | Anatomy |
Chromosome | 11 |
Comments | QTL was detected using the experiment data of 1995. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 3,033,385-3,812,645 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 11 | 78.9-82.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBJ005 | 11 | 78.9 | 82.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1350 | RFLP | Oryza sativa | qtl_marker |
To | C794 | RFLP | Oryza sativa | qtl_marker |
To | C410 | RFLP | Oryza sativa | qtl_marker |
To | C83 | RFLP | Oryza sativa | qtl_marker |
To | R2918 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000539) | Sasahara-H et al., 1999 (IAGP) |
Plant Structure | (PO:0000034) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Sasahara-H et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 3,033,385 | 3,812,645 | ~160K SNPs x 20 accessions (McNally 2... | 539 | Search for SNPs |
chr11 | 3,033,385 | 3,812,645 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr11 | 3,033,385 | 3,812,645 | Huang X, et al, Nat Genetics 2010 Nov... | 1,983 | Search for SNPs |
chr11 | 3,033,385 | 3,812,645 | RiceDiversity 44K SNP assay, 34 trait... | 1,983 | Search for SNPs |
chr11 | 3,033,385 | 3,812,645 | RiceDiversity 44K SNP assay, 34 trait... | 118 | Search for SNPs |