QTL Accession ID | AQBJ001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LVBNB |
Trait Name | large vascular bundle number |
Published Symbol | qNVB-1-1 |
Trait Synonym(s) |
LVB number of large vascular bundles |
Trait Category | Anatomy |
Chromosome | 1 |
Comments | QTL was detected using the experiment data of 1995. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 15,617,197-21,703,068 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 1 | 99.9-103.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBJ001 | 1 | 99.9 | 103.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R2159 | RFLP | Oryza sativa | qtl_marker |
To | XNpb368 | RFLP | Oryza sativa | qtl_marker |
To | XNpb364 | RFLP | Oryza sativa | qtl_marker |
To | C178 | RFLP | Oryza sativa | qtl_marker |
To | C316 | RFLP | Oryza sativa | qtl_marker |
To | R1928 | RFLP | Oryza sativa | qtl_marker |
To | C904 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000539) | Sasahara-H et al., 1999 (IAGP) |
Plant Structure | (PO:0000034) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Sasahara-H et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 15,617,197 | 21,703,068 | ~160K SNPs x 20 accessions (McNally 2... | 2,041 | Search for SNPs |
chr1 | 15,617,197 | 21,703,068 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
chr1 | 15,617,197 | 21,703,068 | Huang X, et al, Nat Genetics 2010 Nov... | 9,999 | Search for SNPs |
chr1 | 15,617,197 | 21,703,068 | RiceDiversity 44K SNP assay, 34 trait... | 9,999 | Search for SNPs |
chr1 | 15,617,197 | 21,703,068 | RiceDiversity 44K SNP assay, 34 trait... | 436 | Search for SNPs |