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Oryza sativa QTL "AQBG018" (white-backed planthopper resistance)
| QTL Accession ID | AQBG018 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | WBPHRS |
| Trait Name | white-backed planthopper resistance |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Biotic stress |
| Chromosome | 12 |
| Comments | Egg mortality (EM) from experiment C (1996) was measured to evaluate ovicidal response of rice to whitebacked planthopper and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 7,547,013-21,216,644 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 12 | 29.7-45.4 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBG018 | 12 | 29.7 | 45.4 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | Adkb | RFLP | Oryza sativa | qtl_marker |
| To | XNpb402 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb88 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb238 | RFLP | Oryza sativa | qtl_marker |
| To | C751 | RFLP | Oryza sativa | qtl_marker |
| To | R1869 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000205) | Tsunematsu-H et al., 1999 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007252) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Tsunematsu-H et al., 1999 (SM) |
Database Cross-References (1)
SNPs (73,048)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 7,547,013 | 21,216,644 | ~160K SNPs x 20 accessions (McNally 2... | 3,812 | Search for SNPs |
| chr12 | 7,547,013 | 21,216,644 | '1536 chip' - 1311 SNPs x 395 rice ac... | 45 | Search for SNPs |
| chr12 | 7,547,013 | 21,216,644 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 633 | Search for SNPs |
| chr12 | 7,547,013 | 21,216,644 | Huang X, et al, Nat Genetics 2010 Nov... | 33,800 | Search for SNPs |
| chr12 | 7,547,013 | 21,216,644 | RiceDiversity 44K SNP assay, 34 trait... | 33,800 | Search for SNPs |
| chr12 | 7,547,013 | 21,216,644 | RiceDiversity 44K SNP assay, 34 trait... | 958 | Search for SNPs |
