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Oryza sativa QTL "AQBC042" (tiller number)
| QTL Accession ID | AQBC042 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TINB | ||||||||||
| Trait Name | tiller number | ||||||||||
| Published Symbol | mtn3 | ||||||||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||||||||
| Chromosome | 3 | ||||||||||
| Comments | QTL was detected by genetic main effect using maximum tiller number (MTN) in two locations (Hangzhou and Hainan). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 28,788,986-28,813,128 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 141.4-150 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBC042 | 3 | 141.4 | 150 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ519 | RFLP | Oryza sativa | qtl_marker |
| To | RZ448 | RFLP | Oryza sativa | qtl_marker |
| To | CDO337 | RFLP | Avena sativa | qtl_marker |
| To | S2AS3I2 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000346) | Yan-J et al., 1999 (IAGP) |
| Plant Structure | (PO:0005001) | Yan-J et al., 1999 (SM) |
| Plant Growth and Development Stage | (PO:0007073) | Yan-J et al., 1999 (SM) |
| Growth Stage | (GRO:0007049) | Yan-J et al., 1999 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yan-J et al., 1999 (SM) |
Database Cross-References (1)
SNPs (164)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 28,788,986 | 28,813,128 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
| chr3 | 28,788,986 | 28,813,128 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 28,788,986 | 28,813,128 | Huang X, et al, Nat Genetics 2010 Nov... | 81 | Search for SNPs |
| chr3 | 28,788,986 | 28,813,128 | RiceDiversity 44K SNP assay, 34 trait... | 81 | Search for SNPs |
| chr3 | 28,788,986 | 28,813,128 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
