QTL Accession ID | AQAY003 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | ALSN | ||||
Trait Name | aluminum sensitivity | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 6 | ||||
Comments | The relative root elongation (RRE) after exposure to 50 micro-M Al for 24 hours was measured and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 4,346,231-6,486,774 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NIAS Kosh/Kas BIL QTL 2003 | BNL6.32 | 6 | 12-20.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAY003 | 6 | 12 | 20.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | S1520 | RFLP | Oryza sativa | qtl_marker |
To | G200 | RFLP | Oryza sativa | qtl_marker |
To | R1952 | RFLP | Oryza sativa | qtl_marker |
To | R2171 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000354) | Ma-J-F et al., 2002 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007306) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ma-J-F et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 4,346,231 | 6,486,774 | ~160K SNPs x 20 accessions (McNally 2... | 955 | Search for SNPs |
chr6 | 4,346,231 | 6,486,774 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
chr6 | 4,346,231 | 6,486,774 | Huang X, et al, Nat Genetics 2010 Nov... | 6,366 | Search for SNPs |
chr6 | 4,346,231 | 6,486,774 | RiceDiversity 44K SNP assay, 34 trait... | 6,366 | Search for SNPs |
chr6 | 4,346,231 | 6,486,774 | RiceDiversity 44K SNP assay, 34 trait... | 232 | Search for SNPs |