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Oryza sativa QTL "AQAQ009" (blast disease resistance)
| QTL Accession ID | AQAQ009 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | BLRS | ||||||
| Trait Name | blast disease resistance | ||||||
| Published Symbol | qBLASTa-12-2 | ||||||
| Trait Synonym(s) |
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| Trait Category | Biotic stress | ||||||
| Chromosome | 12 | ||||||
| Comments | The area under a disease progress curve (AUDPC) was used to evaluate the resistance to rice blast pathogen. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 532,909-1,595,325 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 12 | 0-7.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAQ009 | 12 | 0 | 7.7 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G193 | RFLP | Oryza sativa | qtl_marker |
| To | RG574 | RFLP | Oryza sativa | qtl_marker |
| To | RZ797 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000074) | Tabien-E et al., 2002 (IAGP) |
| Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Tabien-E et al., 2002 (SM) |
Database Cross-References (1)
SNPs (7,979)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 532,909 | 1,595,325 | ~160K SNPs x 20 accessions (McNally 2... | 535 | Search for SNPs |
| chr12 | 532,909 | 1,595,325 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
| chr12 | 532,909 | 1,595,325 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
| chr12 | 532,909 | 1,595,325 | Huang X, et al, Nat Genetics 2010 Nov... | 3,687 | Search for SNPs |
| chr12 | 532,909 | 1,595,325 | RiceDiversity 44K SNP assay, 34 trait... | 3,687 | Search for SNPs |
| chr12 | 532,909 | 1,595,325 | RiceDiversity 44K SNP assay, 34 trait... | 68 | Search for SNPs |
