QTL Accession ID | AQAQ008 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | BLRS | ||||||
Trait Name | blast disease resistance | ||||||
Published Symbol | qBLASTa-1 | ||||||
Trait Synonym(s) |
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Trait Category | Biotic stress | ||||||
Chromosome | 1 | ||||||
Comments | The area under a disease progress curve (AUDPC) was used to evaluate the resistance to rice blast pathogen. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 30,737,705-40,567,354 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 1 | 217.7-287 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAQ008 | 1 | 217.7 | 287 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG957 | RFLP | Oryza sativa | qtl_marker |
To | G10095 | RFLP | Oryza sativa | qtl_marker |
To | RM128 | SSR | Oryza sativa | qtl_marker |
To | RM212 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM104 | SSR | Oryza sativa | qtl_marker |
To | RZ801 | RFLP | Oryza sativa | qtl_marker |
To | RZ14 | RFLP | Oryza sativa | qtl_marker |
To | RG462 | RFLP | Oryza sativa | qtl_marker |
To | RG236 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000074) | Tabien-E et al., 2002 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tabien-E et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 30,737,705 | 40,567,354 | ~160K SNPs x 20 accessions (McNally 2... | 7,248 | Search for SNPs |
chr1 | 30,737,705 | 40,567,354 | '1536 chip' - 1311 SNPs x 395 rice ac... | 34 | Search for SNPs |
chr1 | 30,737,705 | 40,567,354 | Huang X, et al, Nat Genetics 2010 Nov... | 16,546 | Search for SNPs |
chr1 | 30,737,705 | 40,567,354 | RiceDiversity 44K SNP assay, 34 trait... | 16,546 | Search for SNPs |
chr1 | 30,737,705 | 40,567,354 | RiceDiversity 44K SNP assay, 34 trait... | 1,360 | Search for SNPs |