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Oryza sativa QTL "AQAP030" (brown planthopper resistance)
| QTL Accession ID | AQAP030 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | BPHRS |
| Trait Name | brown planthopper resistance |
| Published Symbol | |
| Trait Synonym(s) | BPH |
| Trait Category | Biotic stress |
| Chromosome | 11 |
| Comments | The resistance index (RI) from the bulk test was used for resistance evaluation and QTL analysis. This locus were found interacting with another locus, AQAP029. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 13,671,613-28,412,347 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 11 | 260.9-274.8 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAP030 | 11 | 260.9 | 274.8 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | L457 | RFLP | Oryza sativa | qtl_marker |
| To | G2132 | RFLP | Oryza sativa | qtl_marker |
| To | RZ536 | RFLP | Oryza sativa | qtl_marker |
| To | RM123 | SSR | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000424) | Xu-X-F et al., 2002 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007134) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007317) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xu-X-F et al., 2002 (SM) |
Database Cross-References (1)
SNPs (98,467)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 13,671,613 | 28,412,347 | ~160K SNPs x 20 accessions (McNally 2... | 6,749 | Search for SNPs |
| chr11 | 13,671,613 | 28,412,347 | '1536 chip' - 1311 SNPs x 395 rice ac... | 76 | Search for SNPs |
| chr11 | 13,671,613 | 28,412,347 | Huang X, et al, Nat Genetics 2010 Nov... | 44,807 | Search for SNPs |
| chr11 | 13,671,613 | 28,412,347 | RiceDiversity 44K SNP assay, 34 trait... | 44,807 | Search for SNPs |
| chr11 | 13,671,613 | 28,412,347 | RiceDiversity 44K SNP assay, 34 trait... | 2,028 | Search for SNPs |
