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Oryza sativa QTL "AQAP012" (brown planthopper resistance)
| QTL Accession ID | AQAP012 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | BPHRS |
| Trait Name | brown planthopper resistance |
| Published Symbol | QBphr11a |
| Trait Synonym(s) | BPH |
| Trait Category | Biotic stress |
| Chromosome | 11 |
| Comments | The damage score (DS) from the bulk test was used for resistance evaluation and QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 5,706,417-5,706,935 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 11 | 49.1-52.2 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAP012 | 11 | 49.1 | 52.2 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ781 | RFLP | Oryza sativa | qtl_marker |
| To | RZ53 | RFLP | Oryza sativa | qtl_marker |
| To | RM167 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM120 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000424) | Xu-X-F et al., 2002 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007134) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007317) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xu-X-F et al., 2002 (SM) |
Database Cross-References (1)
SNPs (3)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 5,706,417 | 5,706,935 | ~160K SNPs x 20 accessions (McNally 2... | 3 | Search for SNPs |
| chr11 | 5,706,417 | 5,706,935 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr11 | 5,706,417 | 5,706,935 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
| chr11 | 5,706,417 | 5,706,935 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
| chr11 | 5,706,417 | 5,706,935 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
