QTL Accession ID | AQAH002 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | BLRS | ||||||
Trait Name | blast disease resistance | ||||||
Published Symbol | DFR-1 | ||||||
Trait Synonym(s) |
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Trait Category | Biotic stress | ||||||
Chromosome | 1 | ||||||
Comments | The sequence of one DNA fragment, DFR-1, was homologous to the maize R gene, Hm1. The mapping position is correspondence with one previously identified rice resistant QTL. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 24,186,290-29,184,844 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Bal/Dul//Naj11 QTL 1998 | BNL6.32 | 1 | 113.5-113.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAH002 | 1 | 113.5 | 113.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R2635 | RFLP | Oryza sativa | qtl_marker |
To | RG462 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000074) | Liu et al., 2002 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Liu et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 24,186,290 | 29,184,844 | ~160K SNPs x 20 accessions (McNally 2... | 2,968 | Search for SNPs |
chr1 | 24,186,290 | 29,184,844 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
chr1 | 24,186,290 | 29,184,844 | Huang X, et al, Nat Genetics 2010 Nov... | 12,565 | Search for SNPs |
chr1 | 24,186,290 | 29,184,844 | RiceDiversity 44K SNP assay, 34 trait... | 12,565 | Search for SNPs |
chr1 | 24,186,290 | 29,184,844 | RiceDiversity 44K SNP assay, 34 trait... | 585 | Search for SNPs |