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Oryza sativa QTL "AQAF013" (blast disease resistance)
| QTL Accession ID | AQAF013 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | BLRS | ||||||
| Trait Name | blast disease resistance | ||||||
| Published Symbol | rbr1d | ||||||
| Trait Synonym(s) |
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| Trait Category | Biotic stress | ||||||
| Chromosome | 1 | ||||||
| Comments | Lesion length (LL) was investigated to evaluate rice blast resistance. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 33,053,493-40,065,325 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 1 | 207.5-212.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAF013 | 1 | 207.5 | 212.3 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM212 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | C547 | RFLP | Oryza sativa | qtl_marker |
| To | R2201 | RFLP | Oryza sativa | qtl_marker |
| To | C2340 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000074) | Chen-H et al., 2003 (IAGP) |
| Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Chen-H et al., 2003 (SM) |
Database Cross-References (1)
SNPs (27,951)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 33,053,493 | 40,065,325 | ~160K SNPs x 20 accessions (McNally 2... | 4,848 | Search for SNPs |
| chr1 | 33,053,493 | 40,065,325 | '1536 chip' - 1311 SNPs x 395 rice ac... | 25 | Search for SNPs |
| chr1 | 33,053,493 | 40,065,325 | Huang X, et al, Nat Genetics 2010 Nov... | 11,060 | Search for SNPs |
| chr1 | 33,053,493 | 40,065,325 | RiceDiversity 44K SNP assay, 34 trait... | 11,060 | Search for SNPs |
| chr1 | 33,053,493 | 40,065,325 | RiceDiversity 44K SNP assay, 34 trait... | 958 | Search for SNPs |
