QTL Accession ID | AQAB022 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LVBNB |
Trait Name | large vascular bundle number |
Published Symbol | qLSVB5-1 |
Trait Synonym(s) |
LVB number of large vascular bundles |
Trait Category | Anatomy |
Chromosome | 5 |
Comments | The QTL was detected from the phenotypic experiment of 1999. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 19,545,411-21,373,047 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 5 | 68.1-77.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAB022 | 5 | 68.1 | 77.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ649 | RFLP | Oryza sativa | qtl_marker |
To | C624 | RFLP | Oryza sativa | qtl_marker |
To | RM42 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM274 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000539) | Cui-K-H et al., 2002 (IAGP) |
Plant Structure | (PO:0000034) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cui-K-H et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 19,545,411 | 21,373,047 | ~160K SNPs x 20 accessions (McNally 2... | 1,026 | Search for SNPs |
chr5 | 19,545,411 | 21,373,047 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr5 | 19,545,411 | 21,373,047 | Huang X, et al, Nat Genetics 2010 Nov... | 2,928 | Search for SNPs |
chr5 | 19,545,411 | 21,373,047 | RiceDiversity 44K SNP assay, 34 trait... | 2,928 | Search for SNPs |
chr5 | 19,545,411 | 21,373,047 | RiceDiversity 44K SNP assay, 34 trait... | 199 | Search for SNPs |