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Oryza sativa QTL "AQA015" (tiller number)
| QTL Accession ID | AQA015 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TINB | ||||||||||
| Trait Name | tiller number | ||||||||||
| Published Symbol | qNOT9-1 | ||||||||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||||||||
| Chromosome | 9 | ||||||||||
| Comments | Trait was measured at 85 DAS (days after seeding). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 11,807,446-15,662,838 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 9 | 26.6-57.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQA015 | 9 | 26.6 | 57.7 |
Associated Markers (10)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ206 | RFLP | Oryza sativa | qtl_marker |
| To | RM321 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM105 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM460 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM409 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM566 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RZ422 | RFLP | Oryza sativa | qtl_marker |
| To | RM434 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | G103 | RFLP | Oryza sativa | qtl_marker |
| To | RM410 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000346) | Hemamalini-G-S et al., 2000 (IAGP) |
| Plant Structure | (PO:0005001) | Hemamalini-G-S et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007073) | Hemamalini-G-S et al., 2000 (SM) |
| Growth Stage | (GRO:0007049) | Hemamalini-G-S et al., 2000 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hemamalini-G-S et al., 2000 (SM) |
Database Cross-References (1)
SNPs (18,438)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr9 | 11,807,446 | 15,662,838 | ~160K SNPs x 20 accessions (McNally 2... | 1,454 | Search for SNPs |
| chr9 | 11,807,446 | 15,662,838 | '1536 chip' - 1311 SNPs x 395 rice ac... | 20 | Search for SNPs |
| chr9 | 11,807,446 | 15,662,838 | Huang X, et al, Nat Genetics 2010 Nov... | 8,299 | Search for SNPs |
| chr9 | 11,807,446 | 15,662,838 | RiceDiversity 44K SNP assay, 34 trait... | 8,299 | Search for SNPs |
| chr9 | 11,807,446 | 15,662,838 | RiceDiversity 44K SNP assay, 34 trait... | 366 | Search for SNPs |
