Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
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Accession | GR:0060842 | ||||||||||
Gene Symbol | SD1 | ||||||||||
Gene Name | SEMIDWARF 1 | ||||||||||
Synonyms (9) |
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E.C. Numbers (2) |
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Pathway Reactions (1) | RXN1F-170 | ||||||||||
Chromosome No. | 1 | ||||||||||
Gene Type | CDS (Protein coding) | ||||||||||
Has Phenotype | yes | ||||||||||
Description | Semidwarf, resistant to lodging especially at high fertilizer level, high yielding. Elongation of lower internodes less than that of upper internodes from inhibition of cell division during elongation. Defective in biosynthetic enzyme GA20ox-2 that catalyzed the conversion of GA53 to GA20. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 38,381,339-38,384,461bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Hokkaido Morphological 2000 | BNL6.32 | 1 | 73-73cM | View Comparative Map | |||
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JRGP RFLP 2000 | BNL6.32 | 1 | 149.1-151cM | View Comparative Map | ||||
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KRGRP 1998 | BNL6.32 | 1 | 190.1-190.1cM | View Comparative Map | ||||
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QTL | KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 1 | 190.1-190.1cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 2001 | BNL6.32 | 1 | 103.5-104.1cM | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Cornell RFLP 2001 | 1 | 103.5 cM | 104.1 cM | cu-sl-2001-1-ip15 |
2 | Hokkaido Morphological 2000 | 1 | 73 cM | 73 cM | morph-2000-1-13 |
3 | JRGP RFLP 2000 | 1 | 149.1 cM | 151 cM | jrgp-2000-1-449 |
4 | KRGRP 1998 | 1 | 190.1 cM | 190.1 cM | krgrp-1998-1-56 |
5 | KRGRP Mil23/Gih QTL 1998 | 1 | 190.1 cM | 190.1 cM | chy1998a-56 |
6 | Rice japonica MSU6 | Chr. 1 | 38381339 bp | 38384461 bp | grjp2009a-1-GR:0060842 |
Trait | anther color (TO:0000187), growth and development trait (TO:0000357), plant growth hormone sensitivity (TO:0000401), stem length (TO:0000576), enzyme activity trait (TO:0000599) |
Plant Structure | stem (PO:0009047) |
Plant Growth and Development Stage | whole plant development stage (PO:0007033), whole plant fruit ripening complete stage (PO:0007038), inflorescence emergence stage (PO:0007041), stem elongation stage (PO:0007089), leaf production stage (PO:0007133), sporophyte vegetative stage (PO:0007134) |
Cereal Plant Growth Stage | rice growth stage (GRO:0007040), 06-heading stage (GRO:0007044), 09-mature grain stage (GRO:0007045), 02-seedling (GRO:0007047), 04-stem elongation stage (GRO:0007048), A-vegetative stage (GRO:0007139) |
Molecular Function | gibberellin 20-oxidase activity (GO:0045544) |
Biological Process | response to abiotic stimulus (GO:0009628), gibberellin metabolic process (GO:0009685), gibberellin biosynthetic process (GO:0009686), unidimensional cell growth (GO:0009826) |
Environment | Magnaporthe grisea (EO:0007226), laboratory study (EO:0007255) |
Species | Accession | Trait Symbol | Trait Name | Evidence |
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Oryza sativa | CQAI1 | PTHT | plant height | Hemamalini-G-S et al., 2000 (IAGP) |
Oryza sativa | CQAI3 | PTHT | plant height | Hemamalini-G-S et al., 2000 (IAGP) |
Oryza sativa | CQAI6 | PTHT | plant height | Hemamalini-G-S et al., 2000 (IAGP) |
Oryza sativa | AQEA001 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA002 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA003 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA004 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA005 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA006 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA007 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA008 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA009 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA010 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA011 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA012 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Oryza sativa | AQEA013 | PTHT | plant height | Li-Z-K et al., 2003 (IAGP) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr1 | 38,381,339 | 38,384,461 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr1 | 38,381,339 | 38,384,461 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 38,381,339 | 38,384,461 | Huang X, et al, Nat Genetics 2010 Nov... | 12 | Search for SNPs |
chr1 | 38,381,339 | 38,384,461 | RiceDiversity 44K SNP assay, 34 trait... | 12 | Search for SNPs |
chr1 | 38,381,339 | 38,384,461 | RiceDiversity 44K SNP assay, 34 trait... | 0 |