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Oryza sativa Japonica Group SSR "RM482"
| ID | 11165 |
|---|---|
| Name | RM482 |
| Synonyms (0) | None. |
| Type | SSR |
| Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
| Germplasm | |
| Description | |
| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | RM482 |
| Repeat Motif | (AT)9 |
| Anneal Temperature | 55 |
| Expected PCR Product Size | 188 |
| Sequence Source | AQ365132 |
| Linkage Group | |
| Remarks |
Database Cross-References (3)
Sequences (4)
Related Sequences (4)
Align All Sequences
Map Positions (5)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 35,272,373-35,272,560 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell SSR 2001 | BNL6.32 | 2 | 187.5-187.5 cM | View Comparative Map | |||
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| IRMI 2003 | BNL6.32 | 2 | 156.3-156.3 cM | View Comparative Map | ||||
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| QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 2 | 174.3-174.3 cM | View Comparative Map | |||
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| Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 2 | 187.5-187.5 cM | View Comparative Map | ||||
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Associations (9)
| Species | Type | Name | Assoc. Type |
|---|---|---|---|
| Oryza sativa | QTL | AQA029 | qtl_marker |
| Oryza sativa | QTL | AQGM020 | qtl_marker |
| Oryza sativa | QTL | AQGM030 | qtl_marker |
| Oryza sativa | QTL | CQAE16 | qtl_marker |
| Oryza sativa | QTL | CQAE7 | qtl_marker |
| Oryza sativa Japonica Group | Primer | RM482_forward | primer_forward |
| Oryza sativa Japonica Group | Primer | RM482_reverse | primer_reverse |
| Oryza sativa Japonica Group | GSS | AQ365132 | contained_in_sequence |
| Oryza sativa Japonica Group | GSS | AQ365132 | source_sequence |
Associated Ontologies (0)
Images (0)
