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Oryza sativa SSR "RM152"
| ID | 11453 |
|---|---|
| Name | RM152 |
| Synonyms (1) | OSR34 |
| Type | SSR |
| Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
| Germplasm | |
| Description | |
| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | RM152 |
| Repeat Motif | (GGC)10 |
| Anneal Temperature | 55 |
| Expected PCR Product Size | 151 |
| Sequence Source | |
| Linkage Group | |
| Remarks |
Database Cross-References (2)
| Gramene Literature | Akagi-H, Yokozeki-Y, Inagaki-A, Fujimura-T, "Microsatellite DNA markers for rice chromosomes", Theoretical and applied genetics, 1996, vol. 93, pp. 1071-1077 |
|---|---|
| Gramene Diversity Rice Marker | 150 |
Sequences (1)
Related Sequence (1)
GGCGAAACCACCACACCTCACCGTCGAATCGAATCCAAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGATGGGGATCCA
CGAGCACGTCGAGGGGATCAAGGCGCACTGGGCGAAGAACTTCTCCTTCCTCGACTACTTCAAGAAGGTCTACGGCCGGG
ACAAGCCCCTCCCCAAGTGGACCGATGCCGACGTCGACGAGTTCATCGNCTCCGATCCCGTCTACGNCCCGCAGCTCAAG
GCGATGAGGGAATCCAGGAAGTTCGCGNTCGGCGGGGNTCTCGTCGACGNCGCGCAACCTNGGGCGGGCATCGCCCTAAA
AGTACCTCCAAGGGCCCCGGAAA
Map Positions (17)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 682,963-683,114 bp | View Comparative Map | |||
|
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| BNL6.32 | Chr. 8 | 682,990-683,186 bp | View Comparative Map | |||||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 8 | 3.3-3.3 cM | View Comparative Map | |||
|
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Associations (9)
| Species | Type | Name | Assoc. Type |
|---|---|---|---|
| Oryza sativa | QTL | AQA005 | qtl_marker |
| Oryza sativa | QTL | AQDX011 | qtl_marker |
| Oryza sativa | QTL | AQEI077 | qtl_marker |
| Oryza sativa | QTL | AQEI093 | qtl_marker |
| Oryza sativa | QTL | AQFJ005 | qtl_marker |
| Oryza sativa | QTL | AQFJ015 | qtl_marker |
| Oryza sativa | QTL | AQFP002 | qtl_marker |
| Oryza sativa Japonica Group | SSR | AUT22252 | equivalent_to |
| Oryza sativa Japonica Group | EST | D22858 | contained_in_sequence |
Associated Ontologies (0)
Images (0)
