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Oryza sativa SSR "RM138"
| ID | 11171 |
|---|---|
| Name | RM138 |
| Synonyms (1) | OSR26 |
| Type | SSR |
| Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
| Germplasm | |
| Description | |
| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | RM138 |
| Repeat Motif | (GT)14 |
| Anneal Temperature | 55 |
| Expected PCR Product Size | 233 |
| Sequence Source | |
| Linkage Group | |
| Remarks |
Database Cross-References (2)
| Gramene Literature | Akagi-H, Yokozeki-Y, Inagaki-A, Fujimura-T, "Microsatellite DNA markers for rice chromosomes", Theoretical and applied genetics, 1996, vol. 93, pp. 1071-1077 |
|---|---|
| Gramene Diversity Rice Marker | 232 |
Sequences (1)
Related Sequence (1)
GTGGGGATCGCGGTGCAGGCGGACTGGGAGAACCGCGAGTTCATCTCCAACATCTCCCTCAACGTCCGTCGCCTCTTCGA
CTTCCTCCTCCGATTCGAAGCTACTACGAAGAGCAAACTTGCGTCCTTGAATNAGAAGCTGGACATCCTAGAGCGGAAAC
TGGAGGTGCTTGAGGTTCAAGTGAGCAGCGCAACAACCAATCCATCCGTTTTCAACTAGTAAGTGCAGTTAAGGGCTGCT
TGTCTGCACATAAGTAGTGCTTTCAATGTGTTATGGGTTCAAAAGGACAGAGCTTTGGATGTCTGTATTGTGGGTGCAAG
AGGAGAGGTTGTTCCTGTGTGTTTCTCTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATCTGTATNCAGTTCCATA
GCGTCAAAGGCAGCTTCTTTTCTACTCAATTCCATGTACAATTGTAACG
Map Positions (8)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell SSR 2001 | BNL6.32 | 2 | 196.8-196.8 cM | View Comparative Map | |||
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| QTL | CNYU Bal/Nan//Bal BC1 QTL 2001 | BNL6.32 | 2 | 176.72-176.72 cM | View Comparative Map | |||
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| BNL6.32 | 2 | 176.73-176.73 cM | View Comparative Map | |||||
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| Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 2 | 196.8-196.8 cM | View Comparative Map | ||||
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| IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 2 | 260.2-260.2 cM | View Comparative Map | ||||
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| IRRI RD23/Olong F2 QTL 2003 | BNL6.32 | 2 | 216.3-216.3 cM | View Comparative Map | ||||
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| M202/IR50 UCD QTL 2003 | BNL6.32 | 2 | 135.5-135.5 cM | View Comparative Map | ||||
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| NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 2 | 181.9-181.9 cM | View Comparative Map | ||||
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Associations (16)
| Species | Type | Name | Assoc. Type |
|---|---|---|---|
| Oryza sativa | QTL | AQA029 | qtl_marker |
| Oryza sativa | QTL | AQAQ001 | qtl_marker |
| Oryza sativa | QTL | AQAQ010 | qtl_marker |
| Oryza sativa | QTL | AQAQ018 | qtl_marker |
| Oryza sativa | QTL | AQBT001 | qtl_marker |
| Oryza sativa | QTL | AQCU023 | qtl_marker |
| Oryza sativa | QTL | AQCU035 | qtl_marker |
| Oryza sativa | QTL | AQCU116 | qtl_marker |
| Oryza sativa | QTL | AQCU121 | qtl_marker |
| Oryza sativa | QTL | AQFR016 | qtl_marker |
| Oryza sativa | QTL | AQFR024 | qtl_marker |
| Oryza sativa | QTL | AQFW058 | qtl_marker |
| Oryza sativa | QTL | AQFW155 | qtl_marker |
| Oryza sativa | QTL | AQFW203 | qtl_marker |
| Oryza sativa | QTL | AQFW207 | qtl_marker |
| Oryza sativa Japonica Group | EST | D48106 | contained_in_sequence |
Associated Ontologies (0)
Images (1)
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