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Oryza sativa SSR "RM135"
| ID | 11212 | ||
|---|---|---|---|
| Name | RM135 | ||
| Synonyms (2) |
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| Type | SSR | ||
| Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||
| Germplasm | |||
| Description | |||
| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | RM135 |
| Repeat Motif | (CGG)10 |
| Anneal Temperature | 61 |
| Expected PCR Product Size | 131 |
| Sequence Source | |
| Linkage Group | |
| Remarks |
Database Cross-References (2)
| Gramene Literature | Akagi-H, Yokozeki-Y, Inagaki-A, Fujimura-T, "Microsatellite DNA markers for rice chromosomes", Theoretical and applied genetics, 1996, vol. 93, pp. 1071-1077 |
|---|---|
| Gramene Diversity Rice Marker | 176 |
Sequences (1)
Related Sequence (1)
ACTCTNACTCTGTCTCCTCCCCCGCGTCGGTCGCTTCGCTTCTACTGGAGGAGAGCAGAGGTGGTGGTTGGTGAGANAGG
ATGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGCCGGCCAGAAGCTGAAGAGCATGGACGTCGACAAGCT
GGAGAACGGCGGCGACAAGCCGCCCTCAAGTACCACGGCTGGAGGGCCATGCCCTTCATCATAGGGAACGAGACGTTCGA
GAAGCTGGGGACGCTGGGGACGTCGGCGAACCTGCTGGTGTACCTGACGCAGGTGTTNCACATTCGGANGTTGGACGGGC
GACGTTCTTAACGGCCTTAACGGAACA
Map Positions (15)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 27,411,671-27,411,781 bp | View Comparative Map | |||
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| BNL6.32 | Chr. 3 | 27,411,681-27,411,811 bp | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell SSR 2001 | BNL6.32 | 3 | 157.3-157.3 cM | View Comparative Map | |||
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| IRMI 2003 | BNL6.32 | 3 | 120.4-120.4 cM | View Comparative Map | ||||
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| QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 3 | 111.8-111.8 cM | View Comparative Map | |||
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| CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 3 | 153.6-153.6 cM | View Comparative Map | ||||
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| CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 3 | 134.5-134.5 cM | View Comparative Map | ||||
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| CNWHU B5/Min63 QTL 2004 | BNL6.32 | 3 | 56.1-56.1 cM | View Comparative Map | ||||
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| CNYU Bal/Nan//Bal BC1 QTL 2001 | BNL6.32 | 3a | 22.5-22.5 cM | View Comparative Map | ||||
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| Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 3 | 157.3-157.3 cM | View Comparative Map | ||||
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| IRRI IR622/IR600 QTL 2003 | BNL6.32 | 3 | 152.5-152.5 cM | View Comparative Map | ||||
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| IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 223.1-223.1 cM | View Comparative Map | ||||
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| IRRI RD23/Olong F2 QTL 2003 | BNL6.32 | 3 | 145.8-145.8 cM | View Comparative Map | ||||
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| NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 8 | 82.5-82.5 cM | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell RFLP 2001 | BNL6.32 | 3 | 80.6-80.6 cM | View Comparative Map | |||
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Associations (28)
Associated Ontologies (0)
Images (1)
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