Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||
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Accession | GR:0800010 | ||
Gene Symbol | AID1 | ||
Gene Name | Anther Indehiscence1 | ||
Synonyms (2) |
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E.C. Numbers (0) | |||
Pathway Reactions (0) | |||
Chromosome No. | 6 | ||
Gene Type | CDS (Protein coding) | ||
Has Phenotype | yes | ||
Description | AID1 is a single MYB domain DNA-binding protein, it is closely related to the telomere-binding proteins of human, mouse and Arabidopsis. The aid1 mutation shows partial to complete spikelet sterility, fewer tillers and late flowering. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 4,014,963-4,018,328bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | JRGP RFLP 2000 | BNL6.32 | 6 | 13.8-15.2cM | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | JRGP RFLP 2000 | 6 | 13.8 cM | 15.2 cM | jrgp-rflp-2000-6_GR:0800010 |
2 | Rice japonica MSU6 | Chr. 6 | 4014963 bp | 4018328 bp | grjp2009a-6-GR:0800010 |
Trait | pollen sterility (TO:0000053), days to heading (TO:0000137), pollen free (TO:0000245), tiller number (TO:0000346), spikelet sterility (TO:0000436), male sterility (TO:0000437) |
Plant Structure | septum (PO:0000030), PO:0006446 (PO:0006446), PO:0006449 (PO:0006449), vascular leaf (PO:0009025) |
Plant Growth and Development Stage | G anther dehiscence stage (PO:0001035) |
Cereal Plant Growth Stage | stamen stage ST6-5 (GRO:0007230) |
Cellular Component | nucleus (GO:0005634) |
Molecular Function | DNA binding (GO:0003677), sequence-specific DNA binding transcription factor activity (GO:0003700) |
Biological Process | regulation of transcription, DNA-dependent (GO:0006355), anther dehiscence (GO:0009901), pollen maturation (GO:0010152), regulation of programmed cell death (GO:0043067) |
Environment | green house study (EO:0007248), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr6 | 4,014,963 | 4,018,328 | ~160K SNPs x 20 accessions (McNally 2... | 4 | Search for SNPs |
chr6 | 4,014,963 | 4,018,328 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 4,014,963 | 4,018,328 | Huang X, et al, Nat Genetics 2010 Nov... | 7 | Search for SNPs |
chr6 | 4,014,963 | 4,018,328 | RiceDiversity 44K SNP assay, 34 trait... | 7 | Search for SNPs |
chr6 | 4,014,963 | 4,018,328 | RiceDiversity 44K SNP assay, 34 trait... | 0 |