Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0101290 | ||||
Gene Symbol | NYC1 | ||||
Gene Name | Non-Yellow Coloring 1 | ||||
Synonyms (3) |
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E.C. Numbers (0) | |||||
Pathway Reactions (1) | Glutamate 5-kinase | ||||
Chromosome No. | 1 | ||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | yes | ||||
Description | The gene encodes for a short-chain dehydrogenase/reductase (SDR) enzyme and is localized in plastid. It is essential for regulating degradation of Light Harvesting Complex II (LHCII) and thylakoid during senescence. However, the mutant forms of the gene avoids degradation of LHCII, thylakoids and chlorophyll, thus resulting in stay green type of phenotype. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 7,023,297-7,029,610bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 1 | 7023297 bp | 7029610 bp | grjp2009a-1-GR:0101290 |
Trait | chlorophyll content (TO:0000495), enzyme activity trait (TO:0000599), stay green trait (TO:0002712) |
Plant Structure | vascular leaf (PO:0009025), lemma (PO:0009037), palea (PO:0009038), leaf sheath (PO:0020104), inflorescence axis (PO:0020122) |
Plant Growth and Development Stage | 2 leaf expansion stage (PO:0001052), 4 leaf senescence stage (PO:0001054) |
Cereal Plant Growth Stage | 02-seedling (GRO:0007047) |
Cellular Component | plastid (GO:0009536), plastid membrane (GO:0042170) |
Molecular Function | oxidoreductase activity (GO:0016491) |
Biological Process | PSII associated light-harvesting complex II catabolic process (GO:0010304), chlorophyll catabolic process (GO:0015996) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr1 | 7,023,297 | 7,029,610 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr1 | 7,023,297 | 7,029,610 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 7,023,297 | 7,029,610 | Huang X, et al, Nat Genetics 2010 Nov... | 28 | Search for SNPs |
chr1 | 7,023,297 | 7,029,610 | RiceDiversity 44K SNP assay, 34 trait... | 28 | Search for SNPs |
chr1 | 7,023,297 | 7,029,610 | RiceDiversity 44K SNP assay, 34 trait... | 0 |