Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0101281 | ||||
Gene Symbol | ZIP1 | ||||
Gene Name | Zinc-regulated transporter 1 | ||||
Synonyms (3) |
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E.C. Numbers (0) | |||||
Pathway Reactions (0) | |||||
Chromosome No. | 1 | ||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | no | ||||
Description | The gene encodes for a membrane localized zinc ion (Zn2+) transporter. The mRNA expression was detected in vascular bundles of the leaf. It was also expressed in higher amounts in root compared to shoot when plants were grown under Zn deficient conditions. Its expression was not detected in plants grown in normal conditions containing Zn. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 42,904,522-42,906,430bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 1 | 42904522 bp | 42906430 bp | grjp2009a-1-GR:0101281 |
Plant Structure | leaf vascular system (PO:0000036), vascular bundle (PO:0005020), root (PO:0009005), vascular leaf (PO:0009025) |
Cereal Plant Growth Stage | A-vegetative stage (GRO:0007139) |
Cellular Component | integral to membrane (GO:0016021) |
Molecular Function | zinc ion transmembrane transporter activity (GO:0005385) |
Biological Process | zinc ion transport (GO:0006829), response to zinc ion (GO:0010043) |
Environment | zinc nutrient regimen (EO:0007309) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr1 | 42,904,522 | 42,906,430 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr1 | 42,904,522 | 42,906,430 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 42,904,522 | 42,906,430 | Huang X, et al, Nat Genetics 2010 Nov... | 7 | Search for SNPs |
chr1 | 42,904,522 | 42,906,430 | RiceDiversity 44K SNP assay, 34 trait... | 7 | Search for SNPs |
chr1 | 42,904,522 | 42,906,430 | RiceDiversity 44K SNP assay, 34 trait... | 0 |