Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0101275 | ||||
Gene Symbol | ZIP4 | ||||
Gene Name | Zinc-regulated transporter 4 | ||||
Synonyms (3) |
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E.C. Numbers (0) | |||||
Pathway Reactions (0) | |||||
Chromosome No. | 8 | ||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | yes | ||||
Description | The gene encodes for a plasma membrane localized zinc (Zn) transporter. Highly expressed in meristem and phloem cells of roots and shoots under zinc deficient growth medium. The over expression of ZIP4 under constitutive 35S promoter showed higher expression in shoots and less in roots relative to vector controls. However, the Zn2+ concentration was 10x more in roots, 5x lower in shoots and 4x lower in seeds compared to controls. | ||||
Curator Comment | Zinc is an essential nutrient for plants. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 6,266,828-6,269,910bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 8 | 6266828 bp | 6269910 bp | grjp2009a-8-GR:0101275 |
Trait | zinc sensitivity (TO:0000351) |
Plant Structure | epidermal cell (PO:0004013), phloem (PO:0005417), root (PO:0009005), shoot system (PO:0009006) |
Cellular Component | plasma membrane (GO:0005886), membrane (GO:0016020), integral to membrane (GO:0016021), cytoplasmic membrane-bounded vesicle (GO:0016023) |
Molecular Function | zinc ion transmembrane transporter activity (GO:0005385), zinc ion binding (GO:0008270), metal ion transmembrane transporter activity (GO:0046873) |
Biological Process | zinc ion transport (GO:0006829), response to zinc ion (GO:0010043), metal ion transport (GO:0030001) |
Environment | zinc nutrient regimen (EO:0007309), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr8 | 6,266,828 | 6,269,910 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr8 | 6,266,828 | 6,269,910 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr8 | 6,266,828 | 6,269,910 | Huang X, et al, Nat Genetics 2010 Nov... | 9 | Search for SNPs |
chr8 | 6,266,828 | 6,269,910 | RiceDiversity 44K SNP assay, 34 trait... | 9 | Search for SNPs |
chr8 | 6,266,828 | 6,269,910 | RiceDiversity 44K SNP assay, 34 trait... | 0 |