Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||
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Accession | GR:0101270 | ||
Gene Symbol | TBP1 | ||
Gene Name | Telomere Binding Protein 1 | ||
Synonyms (2) |
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E.C. Numbers (0) | |||
Pathway Reactions (0) | |||
Chromosome No. | 2 | ||
Gene Type | CDS (Protein coding) | ||
Has Phenotype | no | ||
Description | It encodes for the DNA-binding protein that specifically binds DNA with two or more duplex repeats TTTAGGG recognized as telomeric repeat sequence. It bears high homology to Myb-like DNA binding motif present at the C-terminus. It is expressed ubiquitously. The protein is involved in negative regulation of telomere length and positive regulation of telomere stability. The phenotypes include telomere dysfunction, structural defects in vegetative and reproductive organs and formation of bridged chromosomes in pollen mother cells during anaphase. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 35,080,218-35,084,790bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 2 | 35080218 bp | 35084790 bp | grjp2009a-2-GR:0101270 |
Trait | plant height (TO:0000207), inflorescence anatomy and morphology trait (TO:0000373), germination rate (TO:0000430), mitotic cell cycle trait (TO:0000730) |
Plant Structure | stamen (PO:0009029), spikelet (PO:0009051), microsporocyte (PO:0020047), root cap (PO:0020123) |
Cereal Plant Growth Stage | 01-germination (GRO:0007043), 02-seedling (GRO:0007047), stamen stage ST5-6 (GRO:0007222) |
Cellular Component | chromosome, telomeric region (GO:0000781), nucleus (GO:0005634), mitochondrion (GO:0005739) |
Molecular Function | DNA binding (GO:0003677), double-stranded telomeric DNA binding (GO:0003691) |
Biological Process | meiotic anaphase I (GO:0007133), regulation of telomere maintenance (GO:0032204) |
Environment | sodium chloride regimen (EO:0007048), long day length regimen (EO:0007199), Magnaporthe grisea (EO:0007226), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr2 | 35,080,218 | 35,084,790 | ~160K SNPs x 20 accessions (McNally 2... | 13 | Search for SNPs |
chr2 | 35,080,218 | 35,084,790 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 35,080,218 | 35,084,790 | Huang X, et al, Nat Genetics 2010 Nov... | 16 | Search for SNPs |
chr2 | 35,080,218 | 35,084,790 | RiceDiversity 44K SNP assay, 34 trait... | 16 | Search for SNPs |
chr2 | 35,080,218 | 35,084,790 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |