Oryza sativa gene "Xb3" (GR:0101175)

Browse Ontology Database by: Trait \| Plant Structure \| Growth Stage
Find:	In:	Type:	Species:	With Phenotype

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Accession

GR:0101175

Gene Symbol

Xb3

Gene Name

Xa21-binding protein 3

Synonyms (2)

Ubiquitin ligase

LOC_Os05g02130

E.C. Numbers (0)

Pathway Reactions (1)

Ubiquitin--protein ligase

Chromosome No.

Gene Type

CDS (Protein coding)

Has Phenotype

yes

Description

It encodes for a ubiquitin ligase that binds and stabilizes the Xa21 (GR:0061029) protein. This interaction is required to confer full xa21-mediated resistance to Xanthomonas oryzae pv. oryzae race 6.

Alleles (1)

Germplasm (1)

Nipponbare

Sequences (4)

Protein

Gramene Protein:

Q8LLW2

Nucleotide (DNA)

GenBank Nucleotide:	AF272860
Rice Ensembl Gene:	LOC_Os05g02130
IRGSP Gene:	Os05g0112000

Gene-To-Gene Interactions (0)

Gene Interactions (1)

#	Gene-1	Gene-1 object	Mode of action	Gene-2	Gene-2 object	Evidence	Evidence code	Comment
1	Xb3	protein	binds	XA21	protein	Wang-Y-S et al., 2006	IPI	Confirmed by Yeast 2-hybrid and coimmunoprecipitation experiments.

Map Positions (1)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 5

639,550-643,320bp

View Comparative Map

Details

CMap Preview

Gene Map Positions (1)

Map Position [ View in Marker DB ]
#	Map Set Name	Linkage Group	Start Position	Stop Position	CMap Feature Acc
1	Rice japonica MSU6	Chr. 5	639550 bp	643320 bp	grjp2009a-5-GR:0101175

Associated Ontologies (18)

Trait	rice bacterial blight disease resistance (TO:0000175)
Plant Structure	vascular leaf (PO:0009025)
Molecular Function	ubiquitin-protein ligase activity (GO:0004842), receptor activity (GO:0004872), protein binding (GO:0005515), zinc ion binding (GO:0008270), kinase activity (GO:0016301)
Biological Process	protein ubiquitination (GO:0016567), defense response to bacterium (GO:0042742), protein autoubiquitination (GO:0051865)
Environment	abscisic acid regimen (EO:0007105), long day length regimen (EO:0007199), short day length regimen (EO:0007200), Magnaporthe grisea (EO:0007226), Xanthomonas oryzae pv. oryzae (EO:0007257), tissue culture growth media (EO:0007266), continuous dark (no light) regimen (EO:0007270), unknown environment (EO:0007403)

Associated QTL (0)

Database Cross-References (0)

Literature (1)

Wang-Y-S, Pi-L-Y, Chen-X, Chakrabarty-P-K, Jiang-J, Liu-G-Z, Li-L, Benny-U, Oard-J, Ronald-P-C, Song-W-Y., "Rice XA21 Binding Protein 3 Is a Ubiquitin Ligase Required for Full Xa21-Mediated Disease Resistance", The Plant cell, 2006

Images (0)

SNPs (45)

Chr	Start	Stop	Exp	Num. SNP Positions
chr5	639,550	643,320	~160K SNPs x 20 accessions (McNally 2...	0
chr5	639,550	643,320	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr5	639,550	643,320	Huang X, et al, Nat Genetics 2010 Nov...	22	Search for SNPs
chr5	639,550	643,320	RiceDiversity 44K SNP assay, 34 trait...	22	Search for SNPs
chr5	639,550	643,320	RiceDiversity 44K SNP assay, 34 trait...	1	Search for SNPs