Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||
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Accession | GR:0101172 | ||
Gene Symbol | Atg4 | ||
Gene Name | Autophagy 4 | ||
Synonyms (2) |
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E.C. Numbers (0) | |||
Pathway Reactions (0) | |||
Chromosome No. | 4 | ||
Gene Type | CDS (Protein coding) | ||
Has Phenotype | no | ||
Description | Autophagy pathway is a highly regulated process for bulk degradation of proteins and organelles. Autophagy is shown to be essential for differentiation, development and cellular maintenance. ATG4 protein interacts with the ATG8 protein encoded by Atg8 gene (GR:0101172) and is involved in its post-translational modification. ATG4 is a cysteine protease. It is an ortholog of Arabidopsis thaliana gene APG4B/ATG4B (AT3G59950). |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 34,631,535-34,634,977bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 4 | 34631535 bp | 34634977 bp | grjp2009a-4-GR:0101172 |
Plant Structure | root (PO:0009005), vascular leaf (PO:0009025), inflorescence (PO:0009049), leaf sheath (PO:0020104) |
Plant Growth and Development Stage | late whole plant fruit ripening stage (PO:0007050), LP.02 two leaves visible stage (PO:0007098) |
Cereal Plant Growth Stage | 02-seedling (GRO:0007047), vegetative lag phase (GRO:0007146) |
Cellular Component | cytoplasm (GO:0005737), vacuolar lumen (GO:0005775), autophagic vacuole (GO:0005776) |
Molecular Function | protein binding (GO:0005515), cysteine-type carboxypeptidase activity (GO:0016807), APG8-specific protease activity (GO:0019786) |
Biological Process | autophagy (GO:0006914) |
Environment | long day length regimen (EO:0007199), field study (EO:0007256), unknown environment (EO:0007403) |