Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0080041 | ||||
Gene Symbol | MADS13 | ||||
Gene Name | MADS13 | ||||
Synonyms (3) |
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E.C. Numbers (0) | |||||
Pathway Reactions (0) | |||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | yes | ||||
Description | OsMADS13 is highly expressed in developing ovules, its amino acid sequence shows significant homology with ZAG2, a maize MADS-box gene, which is also expressed mainly in ovule. OsMADS13 is mapped to chromosome 12, which is syntenic to two maize regions where ZAG2 and its paralogous gene ZMM1 have been mapped. OsMADS13 is the ortholog of Arabidopsis STK gene, Petunia FBP7 and FBP11, all belong to D-lineage genes. Mutation of OsMADS13 is female sterile, the ovules are converted into carpelloid structures, the flower is inderterminate, these results suggested the OsMADS13 has a function in floral meristem determinacy. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 5,583,579-5,589,271bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 12 | 5583579 bp | 5589271 bp | grjp2009a-12-GR:0080041 |
Trait | pistil anatomy and morphology trait (TO:0000223), female sterility (TO:0000358) |
Plant Structure | ovule primordium (PO:0000018), PO:0006457 (PO:0006457), PO:0006462 (PO:0006462), PO:0006465 (PO:0006465), PO:0006508 (PO:0006508), ovule primordium visible stage (PO:0007620), fruit (PO:0009001), inflorescence (PO:0009049) |
Plant Growth and Development Stage | fertilized ovule stage (PO:0004505) |
Cereal Plant Growth Stage | embryo stage EM5 (GRO:0007169), embryo stage EM6 (GRO:0007172), embryo stage EM4 (GRO:0007173), embryo stage EM8 (GRO:0007175) |
Molecular Function | sequence-specific DNA binding transcription factor activity (GO:0003700) |
Biological Process | indeterminate inflorescence morphogenesis (GO:0048283), ovule development (GO:0048481) |
Environment | unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr12 | 5,583,579 | 5,589,271 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr12 | 5,583,579 | 5,589,271 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr12 | 5,583,579 | 5,589,271 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 5,583,579 | 5,589,271 | Huang X, et al, Nat Genetics 2010 Nov... | 12 | Search for SNPs |
chr12 | 5,583,579 | 5,589,271 | RiceDiversity 44K SNP assay, 34 trait... | 12 | Search for SNPs |
chr12 | 5,583,579 | 5,589,271 | RiceDiversity 44K SNP assay, 34 trait... | 0 |