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Oryza sativa gene "SODCC1" (GR:0080033) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
|---|---|---|---|---|---|---|---|
| Accession | GR:0080033 | ||||||
| Gene Symbol | SODCC1 | ||||||
| Gene Name | Cytosolic Cu/Zn-siperoxide dismutase | ||||||
| Synonyms (5) |
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| E.C. Numbers (1) | 1.15.1.1 | ||||||
| Pathway Reactions (1) | Superoxide dismutase | ||||||
| Chromosome No. | 3 | ||||||
| Gene Type | CDS (Protein coding) | ||||||
| Has Phenotype | |||||||
| Description | Rice SodCc1 encodes a cytosolic copper/zinc-superoxide dismutase, the transcripts were detected in leaves, roots, seeds and calli. The function of SodCc1 is suggested to involve in defense against oxidative stress. |
Alleles (1) Germplasm (1) Sequences (5) | Protein |
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|---|---|---|---|---|---|---|---|
| Nucleotide (DNA) |
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Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 13,177,888-13,183,309bp | View Comparative Map | |||
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Gene Map Positions (1) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | Rice japonica MSU6 | Chr. 3 | 13177888 bp | 13183309 bp | grjp2009a-3-GR:0080033 |
Associated Ontologies (18) | Trait | oxidative stress (TO:0002657) |
| Plant Structure | plant callus (PO:0005052), root (PO:0009005), seed (PO:0009010), vascular leaf (PO:0009025) |
| Plant Growth and Development Stage | developing seed stage (PO:0004506) |
| Cellular Component | cytosol (GO:0005829) |
| Molecular Function | superoxide dismutase activity (GO:0004784) |
| Biological Process | response to superoxide (GO:0000303), superoxide metabolic process (GO:0006801) |
| Environment | sodium chloride regimen (EO:0007048), abscisic acid regimen (EO:0007105), salt regimen (EO:0007185), long day length regimen (EO:0007199), short day length regimen (EO:0007200), tissue culture growth media (EO:0007266), continuous dark (no light) regimen (EO:0007270), unknown environment (EO:0007403) |
Associated QTL (0)
Database Cross-References (0)
Literature (3) Images (0)
SNPs (24) | Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 13,177,888 | 13,183,309 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr3 | 13,177,888 | 13,183,309 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 13,177,888 | 13,183,309 | Huang X, et al, Nat Genetics 2010 Nov... | 12 | Search for SNPs |
| chr3 | 13,177,888 | 13,183,309 | RiceDiversity 44K SNP assay, 34 trait... | 12 | Search for SNPs |
| chr3 | 13,177,888 | 13,183,309 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
