Oryza sativa gene "CPT1" (GR:0080030)

Browse Ontology Database by: Trait \| Plant Structure \| Growth Stage
Find:	In:	Type:	Species:	With Phenotype

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Accession

GR:0080030

Gene Symbol

CPT1

Gene Name

Coleoptile phototropism1

Synonyms (2)

NPH3-like

LOC_Os02g35970

E.C. Numbers (0)

Pathway Reactions (0)

Chromosome No.

Gene Type

CDS (Protein coding)

Has Phenotype

yes

Description

The rice Coleoptile Phototropism1 (CPT1) gene encodes a ortholog of Arabidopsis NPH3 (At5g64330), it is required for phototropism of coleoptiles and lateral translocation of auxin.

Alleles (1)

CPT1

Germplasm (1)

Nipponbare

Sequences (4)

Protein

Gramene Protein:

Q5KS50

Nucleotide (DNA)

GenBank Nucleotide:	AB186127
Rice Ensembl Gene:	LOC_Os02g35970
IRGSP Gene:	Os02g0568200

Gene-To-Gene Interactions (0)

Gene Interactions (0)

Map Positions (1)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 2

21,602,272-21,607,403bp

View Comparative Map

Details

CMap Preview

Gene Map Positions (1)

Map Position [ View in Marker DB ]
#	Map Set Name	Linkage Group	Start Position	Stop Position	CMap Feature Acc
1	Rice japonica MSU6	Chr. 2	21602272 bp	21607403 bp	grjp2009a-2-GR:0080030

Associated Ontologies (18)

Trait	light sensitivity (TO:0000075), red light sensitivity (TO:0000158), blue light sensitivity (TO:0000159), phototropism (TO:0002650), shoot phototropism (TO:0002651), root phototropism (TO:0002652)
Plant Structure	root (PO:0009005), coleoptile (PO:0020033)
Plant Growth and Development Stage	cotyledon emergence stage (PO:0007049), root development stage (PO:0007520)
Cereal Plant Growth Stage	02-seedling (GRO:0007047)
Molecular Function	signal transducer activity (GO:0004871)
Biological Process	response to light stimulus (GO:0009416), phototropism (GO:0009638)
Environment	green house study (EO:0007248), laboratory study (EO:0007255), tissue culture growth media (EO:0007266), unknown environment (EO:0007403)

Associated QTL (0)

Database Cross-References (0)

Literature (1)

Haga-K, Takano-M, Neumann-R, Iino-M., "The Rice COLEOPTILE PHOTOTROPISM1 gene encoding an ortholog of Arabidopsis NPH3 is required for phototropism of coleoptiles and lateral translocation of auxin", The Plant cell, 2005, vol. 17, pp. 103-115

Images (0)

SNPs (48)

Chr	Start	Stop	Exp	Num. SNP Positions
chr2	21,602,272	21,607,403	~160K SNPs x 20 accessions (McNally 2...	11	Search for SNPs
chr2	21,602,272	21,607,403	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr2	21,602,272	21,607,403	Huang X, et al, Nat Genetics 2010 Nov...	17	Search for SNPs
chr2	21,602,272	21,607,403	RiceDiversity 44K SNP assay, 34 trait...	17	Search for SNPs
chr2	21,602,272	21,607,403	RiceDiversity 44K SNP assay, 34 trait...	3	Search for SNPs