![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
Gene Home |
Search |
|
Submit |
Help |
Tutorial |
FAQ | Release Notes
Oryza sativa gene "CKI" (GR:0080020) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||
|---|---|---|---|
| Accession | GR:0080020 | ||
| Gene Symbol | CKI | ||
| Gene Name | casein kinase I | ||
| Synonyms (2) |
|
||
| E.C. Numbers (0) | |||
| Pathway Reactions (0) | |||
| Chromosome No. | 2 | ||
| Gene Type | CDS (Protein coding) | ||
| Has Phenotype | yes | ||
| Description | OsCKI1 encodes a rice casein kinase 1 protein. It was constitutively expressed in seed, seedling, root, stem, leaf, leaf sheath and panicle, also upregulated by treatments with BR and ABA. Enzymatic assay showed OsCKI1 was capable of phosphorylating casein. Deficiency of OsCKI1 affected root development. OsCKI1-GFP revealed that the localization of OsCKI1 to the nucleus. |
Alleles (1) Germplasm (1) Sequences (5) | Protein |
|
||||||
|---|---|---|---|---|---|---|---|
| Nucleotide (DNA) |
|
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (2) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 24,760,938-24,766,881bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | JRGP RFLP 2000 | BNL6.32 | 2 | 98.2-102.6cM | View Comparative Map | |||
|
||||||||
Gene Map Positions (2) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | JRGP RFLP 2000 | 2 | 98.2 cM | 102.6 cM | jrgp-rflp-2000-2_GR:0080020 |
| 2 | Rice japonica MSU6 | Chr. 2 | 24760938 bp | 24766881 bp | grjp2009a-2-GR:0080020 |
Associated Ontologies (33) | Trait | root number (TO:0000084), auxin sensitivity (TO:0000163), leaf angle (TO:0000206), root length (TO:0000227), root branching (TO:0000257), plant growth hormone sensitivity (TO:0000401), abscisic acid sensitivity (TO:0000615), root development trait (TO:0000656) |
| Plant Structure | root (PO:0009005), elongation zone (PO:0020125) |
| Plant Growth and Development Stage | coleoptile emergence stage (PO:0007045), cotyledon emergence stage (PO:0007049), 0 seed germination stage (PO:0007057) |
| Cereal Plant Growth Stage | 01-germination (GRO:0007043), 02-seedling (GRO:0007047), 2.01-first leaf through coleoptile (GRO:0007059) |
| Cellular Component | nucleus (GO:0005634) |
| Molecular Function | protein kinase activity (GO:0004672), protein serine/threonine kinase activity (GO:0004674), protein tyrosine kinase activity (GO:0004713), ATP binding (GO:0005524) |
| Biological Process | protein phosphorylation (GO:0006468), response to brassinosteroid stimulus (GO:0009741), unidimensional cell growth (GO:0009826), auxin metabolic process (GO:0009850), root development (GO:0048364) |
| Environment | auxin regimen (EO:0007074), abscisic acid regimen (EO:0007105), Magnaporthe grisea (EO:0007226), tissue culture growth media (EO:0007266), rice yellow mottle virus (EO:0007318), unknown environment (EO:0007403), brassinosteroid (EO:0007409) |
Associated QTL (0)
Database Cross-References (0)
Images (0)
SNPs (93) | Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 24,760,938 | 24,766,881 | ~160K SNPs x 20 accessions (McNally 2... | 10 | Search for SNPs |
| chr2 | 24,760,938 | 24,766,881 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr2 | 24,760,938 | 24,766,881 | Huang X, et al, Nat Genetics 2010 Nov... | 40 | Search for SNPs |
| chr2 | 24,760,938 | 24,766,881 | RiceDiversity 44K SNP assay, 34 trait... | 40 | Search for SNPs |
| chr2 | 24,760,938 | 24,766,881 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
