Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||
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Accession | GR:0080014 | ||
Gene Symbol | YAB1 | ||
Gene Name | YABBY1 | ||
Synonyms (2) |
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E.C. Numbers (0) | |||
Pathway Reactions (0) | |||
Chromosome No. | 7 | ||
Gene Type | CDS (Protein coding) | ||
Has Phenotype | yes | ||
Description | OsYAB1 encodes a protein carrying zinc-finger motif and YABBY domain. It is similar to Arabidopsis YAB2 and YAB5. RNA gel blot analysis showed OsYAB1 is expressed in young panicle, especially in the stamen and carpel primordia. Overexpression of OsYAB1 produced additional stamens and carpels compared with those of the wild types. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 3,220,593-3,228,298bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | JRGP RFLP 2000 | BNL6.32 | 7 | 11-25.1cM | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | JRGP RFLP 2000 | 7 | 11 cM | 25.1 cM | jrgp-rflp-2000-7_GR:0080014 |
2 | Rice japonica MSU6 | Chr. 7 | 3220593 bp | 3228298 bp | grjp2009a-7-GR:0080014 |
Trait | pistil anatomy and morphology trait (TO:0000223), stamen number (TO:0000225) |
Plant Structure | carpel primordium (PO:0004703), stamen primordium (PO:0004705) |
Cereal Plant Growth Stage | panicle development (GRO:0007157), ovule stage OV0 (GRO:0007178), stamen stage ST0 (GRO:0007209) |
Cellular Component | nucleus (GO:0005634) |
Molecular Function | DNA binding (GO:0003677), zinc ion binding (GO:0008270) |
Biological Process | specification of floral organ number (GO:0048833) |
Environment | laboratory study (EO:0007255), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr7 | 3,220,593 | 3,228,298 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr7 | 3,220,593 | 3,228,298 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 3,220,593 | 3,228,298 | Huang X, et al, Nat Genetics 2010 Nov... | 25 | Search for SNPs |
chr7 | 3,220,593 | 3,228,298 | RiceDiversity 44K SNP assay, 34 trait... | 25 | Search for SNPs |
chr7 | 3,220,593 | 3,228,298 | RiceDiversity 44K SNP assay, 34 trait... | 0 |