Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||
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Accession | GR:0080013 | ||
Gene Symbol | PNH1 | ||
Gene Name | PINHEAD1 | ||
Synonyms (2) |
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E.C. Numbers (0) | |||
Pathway Reactions (0) | |||
Chromosome No. | 6 | ||
Gene Type | CDS (Protein coding) | ||
Has Phenotype | yes | ||
Description | OsPNH1 is a rice homologue of Arabidopsis PNH/ZLL gene. It is strong expressed in developing leaf primordia, especially in the pro-vascular region and mid-vein region of leaf founder cells in the peripheral SAM domain. The antisense OsPNH1 plants developed malformed leaves with an altered vascular arrangement and abnormal internal structure. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 23,539,785-23,546,202bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | JRGP RFLP 2000 | BNL6.32 | 6 | 82.6-85.4cM | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | JRGP RFLP 2000 | 6 | 82.6 cM | 85.4 cM | jrgp-rflp-2000-6_GR:0080013 |
2 | Rice japonica MSU6 | Chr. 6 | 23539785 bp | 23546202 bp | grjp2009a-6-GR:0080013 |
Trait | plant height (TO:0000207), vascular bundle number (TO:0000472), leaf shape (TO:0000492) |
Plant Structure | leaf vascular system (PO:0000036), peripheral zone (PO:0000225), inflorescence meristem (PO:0000230), adaxial side of leaf primordium (PO:0004726), leaf adaxial epidermis (PO:0006018), leaf abaxial epidermis (PO:0006019), bundle sheath (PO:0006023), portion of vascular tissue (PO:0009015) |
Plant Growth and Development Stage | formation of the leaf founder cells stage (PO:0001003), lemma primordia visible stage (PO:0001055), palea primordia visible stage (PO:0001058), stamen primordium visible stage (PO:0007613) |
Cereal Plant Growth Stage | A-vegetative stage (GRO:0007139), panicle stage PA6 (GRO:0007190) |
Cellular Component | cytoplasm (GO:0005737) |
Molecular Function | translation initiation factor activity (GO:0003743) |
Biological Process | stem cell maintenance (GO:0019827), leaf development (GO:0048366) |
Environment | cold temperature regimen (EO:0007174), Magnaporthe grisea (EO:0007226), green house study (EO:0007248), field study (EO:0007256), tissue culture growth media (EO:0007266), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr6 | 23,539,785 | 23,546,202 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr6 | 23,539,785 | 23,546,202 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 23,539,785 | 23,546,202 | Huang X, et al, Nat Genetics 2010 Nov... | 20 | Search for SNPs |
chr6 | 23,539,785 | 23,546,202 | RiceDiversity 44K SNP assay, 34 trait... | 20 | Search for SNPs |
chr6 | 23,539,785 | 23,546,202 | RiceDiversity 44K SNP assay, 34 trait... | 0 |