Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||
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Accession | GR:0080006 | ||
Gene Symbol | RTS | ||
Gene Name | rice tapetum-specific | ||
Synonyms (2) |
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E.C. Numbers (0) | |||
Pathway Reactions (0) | |||
Chromosome No. | 1 | ||
Gene Type | CDS (Protein coding) | ||
Has Phenotype | yes | ||
Description | RTS is a rice anther-specific gene. Northern blot analysis and in situ hybridization show RTS is predominantly expressed in the tapetum during meiosis and disappears before anthesis. Several nucleotide motifs found in RTS promoter region are also conserved in other anther-specific promoters. Antisense RNA approach and transgenic studies suggest that RTS gene is required for male fertility in rice and its promoter is also fully functional in other dicotyledonous species. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 40,796,830-40,797,482bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | JRGP RFLP 2000 | BNL6.32 | 1 | 161.8-162.1cM | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | JRGP RFLP 2000 | 1 | 161.8 cM | 162.1 cM | jrgp-rflp-2000-1_GR:0080006 |
2 | Rice japonica MSU6 | Chr. 1 | 40796830 bp | 40797482 bp | grjp2009a-1-GR:0080006 |
Trait | pollen sterility (TO:0000053), genetically engineered male sterility (TO:0000111), pollen free (TO:0000245) |
Plant Structure | PO:0006450 (PO:0006450) |
Plant Growth and Development Stage | D pollen mother cell meiosis stage (PO:0001009), J bicellular pollen stage (PO:0001059) |
Cereal Plant Growth Stage | 4.01-pollen development (GRO:0007018), 5.1-early booting stage (GRO:0007149) |
Cellular Component | cytoplasmic membrane-bounded vesicle (GO:0016023) |
Molecular Function | protein transporter activity (GO:0008565) |
Biological Process | secretion by cell (GO:0032940), anther wall tapetum formation (GO:0048656), anther wall tapetum development (GO:0048658) |
Environment | green house study (EO:0007248), laboratory study (EO:0007255), growth chamber study (EO:0007269) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr1 | 40,796,830 | 40,797,482 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr1 | 40,796,830 | 40,797,482 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 40,796,830 | 40,797,482 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr1 | 40,796,830 | 40,797,482 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr1 | 40,796,830 | 40,797,482 | RiceDiversity 44K SNP assay, 34 trait... | 0 |