Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0061116 | ||||
Gene Symbol | pla1 | ||||
Gene Name | plastochron 1 | ||||
Synonyms (4) |
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E.C. Numbers (0) | |||||
Pathway Reactions (0) | |||||
Chromosome No. | 10 | ||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | not curated | ||||
Description | Leaves differentiates nearly twice faster than wild type in vegetative phase. Panicle development was severely disturbed. In plt1.1 (pla1-1) allele, the primordia of primary rachis changes into shoots, showing heterochrony mutation such that the vegetative phase and reproductive phase expressed simultaneously. In the weak allele plt1.2 (pla1-2), only the basal one or two primordia developed as vegetative shoots and remaining primordia developed to produce a truncated panicle. The shoot apical meristem of plt1 was larger than that of the wild type, although the shape was not modified. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 13,587,559-13,589,312bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | JRGP RFLP 2000 | BNL6.32 | 10 | 21.5-24.7cM | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | JRGP RFLP 2000 | 10 | 21.5 cM | 24.7 cM | jrgp-2000-10-ip7 |
2 | Rice japonica MSU6 | Chr. 10 | 13587559 bp | 13589312 bp | grjp2009a-10-GR:0061116 |
Trait | inflorescence branching (TO:0000050), vegetative growth time (TO:0000369), inflorescence development trait (TO:0000621), phyllochron (TO:0000659), mitotic cell cycle trait (TO:0000730), shoot meristem development (TO:0002638) |
Plant Structure | inflorescence axis (PO:0020122), shoot apical meristem (PO:0020148) |
Plant Growth and Development Stage | inflorescence initiation stage (PO:0021004) |
Cereal Plant Growth Stage | A-vegetative stage (GRO:0007139), B-reproductive stage (GRO:0007140), panicle stage PA1 (GRO:0007189) |
Biological Process | inflorescence development (GO:0010229), leaf development (GO:0048366), positive regulation of cell division (GO:0051781) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr10 | 13,587,559 | 13,589,312 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr10 | 13,587,559 | 13,589,312 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr10 | 13,587,559 | 13,589,312 | Huang X, et al, Nat Genetics 2010 Nov... | 5 | Search for SNPs |
chr10 | 13,587,559 | 13,589,312 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
chr10 | 13,587,559 | 13,589,312 | RiceDiversity 44K SNP assay, 34 trait... | 0 |