Oryza sativa gene "OsAMT1:1" (GR:0061104)

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Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Accession

GR:0061104

Gene Symbol

OsAMT1:1

Gene Name

Ammonium transporter-1

Synonyms (1)

LOC_Os04g43070

E.C. Numbers (0)

Pathway Reactions (0)

Gene Type

CDS (Protein coding)

Has Phenotype

not curated

Description

under curation

Alleles (1)

OsAMT1:1

Germplasm (1)

Nipponbare

Sequences (4)

Protein

Gramene Protein:

O04400, Q947N1

Nucleotide (DNA)

Rice Ensembl Gene:	LOC_Os04g43070
IRGSP Gene:	Os04g0509600

Gene-To-Gene Interactions (0)

Gene Interactions (0)

Map Positions (1)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 4

25,315,018-25,317,493bp

View Comparative Map

Details

CMap Preview

Gene Map Positions (1)

Map Position [ View in Marker DB ]
#	Map Set Name	Linkage Group	Start Position	Stop Position	CMap Feature Acc
1	Rice japonica MSU6	Chr. 4	25315018 bp	25317493 bp	grjp2009a-4-GR:0061104

Associated Ontologies (7)

Cellular Component	membrane (GO:0016020)
Molecular Function	ammonium transmembrane transporter activity (GO:0008519)
Biological Process	ammonium transport (GO:0015696)
Environment	Magnaporthe grisea (EO:0007226), tissue culture growth media (EO:0007266), unknown environment (EO:0007403), methyl jasmonate (EO:0007407)

Associated QTL (0)

Database Cross-References (0)

Literature (1)

Sonoda-Y, Ikeda-A, Yamaguchi-J., "Characterization of rice ammonium transporters, OsAMT1;1 and OsAMT1;2", Rice Genetics Newslett., 2000, vol. 17, pp. 89-92

Images (0)

SNPs (34)

Chr	Start	Stop	Exp	Num. SNP Positions
chr4	25,315,018	25,317,493	~160K SNPs x 20 accessions (McNally 2...	0
chr4	25,315,018	25,317,493	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr4	25,315,018	25,317,493	Huang X, et al, Nat Genetics 2010 Nov...	17	Search for SNPs
chr4	25,315,018	25,317,493	RiceDiversity 44K SNP assay, 34 trait...	17	Search for SNPs
chr4	25,315,018	25,317,493	RiceDiversity 44K SNP assay, 34 trait...	0