Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0061060 | ||||
Gene Symbol | ZB8 | ||||
Gene Name | PHENYLALANINE AMMONIA-LYASE | ||||
Synonyms (3) |
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E.C. Numbers (1) | 4.3.1.5 | ||||
Pathway Reactions (1) | Phenylalanine ammonia-lyase | ||||
Chromosome No. | 5 | ||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | not curated | ||||
Description | The gene encodes for enzyme phenylalanine ammonia lyase, which participates in the Phenylpropanoid pathway. | ||||
Curator Comment | This gene was wrongly annotated to sequenced gene LOC_Os02g41680. The curational error was due to the author statement (Zhou et al. 1995) where they mentioned determining the nucleotide sequence of one PAL gene, ZB8. The gene isolated by the authors (GenBank accession X87946) maps to the chromosome-2 of rice compared to the ZB8 which maps to chromosome-5. According to our analysis ZB8 is member of a multigene family in rice and maps to sequenced gene locus LOC_Os05g35290. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 20,890,851-20,893,364bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 5 | 73.6-88.7cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 5 | 74.2-82.8cM | View Comparative Map | ||||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Cornell RFLP 1994 | 5 | 73.6 cM | 88.7 cM | cu-sl-1994-5-ip4 |
2 | Cornell RFLP 2001 | 5 | 74.2 cM | 82.8 cM | cu-sl-2001-5-ip11 |
3 | Rice japonica MSU6 | Chr. 5 | 20890851 bp | 20893364 bp | grjp2009a-5-GR:0061060 |
Cellular Component | cytoplasm (GO:0005737) |
Molecular Function | ammonia ligase activity (GO:0016211), ammonia-lyase activity (GO:0016841) |
Biological Process | L-phenylalanine catabolic process (GO:0006559), biosynthetic process (GO:0009058) |
Environment | Magnaporthe grisea (EO:0007226), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr5 | 20,890,851 | 20,893,364 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr5 | 20,890,851 | 20,893,364 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr5 | 20,890,851 | 20,893,364 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr5 | 20,890,851 | 20,893,364 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr5 | 20,890,851 | 20,893,364 | RiceDiversity 44K SNP assay, 34 trait... | 0 |