suggestions go here
Genes
Search
Quick Search
Genomes/Ensembl
Markers/Sequences
Comparative Maps
QTL
Diversity
Genes
Germplasm
Proteins
Pathways
Plant Reactome (beta)
Ontologies
Literature
BLAST
Gramene Mart
Genomes
Arabidopsis lyrata
Arabidopsis thaliana
Brachypodium distachyon
Brassica rapa
Chlamydomonas reinhardtii
Cyanidioschyzon merolae (red algae)
Glycine max (soybean)
Hordeum vulgare (Barley)
Leersia perrieri (chr 3S)
Musa acuminata (Banana)
Medicago truncatula
Oryza barthii
Oryza brachyantha
Oryza glaberrima
Oryza glumaepatula (chr 3S)
Oryza granulata (chr 3S)
Oryza longistaminata (chr 3S)
Oryza meridionalis (chr 3S)
Oryza minutaBB (chr 3S)
Oryza minutaCC (chr 3S)
Oryza nivara (chr 3S)
Oryza officinalis (chr 3S)
Oryza punctata
Oryza rufipogon (chr 3S)
Oryza rufipogon (FPC map)
Oryza sativa Indica Group
Oryza sativa (rice)
Physcomitrella patens
Populus trichocarpa (poplar)
Selaginella moellendorffii
Setaria italica (foxtail millet)
Solanum lycopersicum (tomato)
Solanum tuberosum (Potato)
Sorghum bicolor
Vitis vinifera (grape)
Zea mays
Triticum aestivum (bread wheat)
Aegilops tauschii (wheat D-genome)
Triticum urartu (wheat A-genome progenitor)
Organelles
Species
Barley (Hordeum)
Brachypodium
Foxtail Millet (Setaria)
Maize (Zea)
Oats (Avena)
Pearl Millet (Pennisetum)
Rice (Oryza)
Rye (Secale)
Sorghum (Sorghum)
Wheat (Triticum)
Wild Rice (Zizania)
Other Oryza
Download
Download Index
FTP Site
Resources
Links Pages
Submit a Term
Newsletters
Web Services
Gene Nomenclature
About
Contact Us
About Us
Outreach Program
Brochure
Advisory Board
Collaborators
Gramene Newsletter
Cite Gramene
Help
Site Map
Help Documents
Release Notes
Tutorials and Exercises
Glossary
FAQs
Gramene Documentation
Workshop Materials
Mailing Lists
Ask Us
Feedback
Gene Home
|
Search
| |
Submit
|
Help
|
Tutorial
|
FAQ
|
Release Notes
Browse Ontology Database by:
Trait
|
Plant Structure
|
Growth Stage
Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
GO:Cellular Component
GO:Molecular Function
GO:Biological Process
EO:Environment
GenBank Accession
Gramene Protein Accession
All Fields
Type:
Not sequenced
CDS (Protein coding)
rRNA (Ribosomal RNA)
tRNA (Transfer RNA)
Pseudogene (non-functional)
Not classified
miRNA (MicroRNA)
siRNA (Small interfering RNA)
Sequenced Gene Loci
All Gene Types
Species:
Aegilops
Aegilops x Triticum
Agropyron
Avena (Oat)
Dasypyrum
Elymus (Wild rye)
Hordeum (Barley)
Lophopyrum
Oryza sativa (Rice)
Phalaris
Secale
Sorghum bicolor (Sorghum)
Thinopyrum
Triticum
Zea mays subsp. mays (Maize)
All Species
With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
Or
view help
Oryza sativa gene "SPL1" (GR:0060902)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060902
Gene Symbol
SPL1
Gene Name
SPOTTED LEAF 1
Synonyms (8)
sl
spotted leaf-1
bl2
spl1
lrd7
lesion resembling disease-7
lrd7
lesion resembling disease-7
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
12
Gene Type
Not sequenced
Has Phenotype
yes
Description
Relatively large reddish brown spots start to appear on leaves of seedlings.
Alleles (1)
lrd7.1
Germplasm (1)
Banshinriki-byogata (HO.698)
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (2)
Oryza sativa (2)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
12
21-21cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
JRGP RFLP 2000
BNL6.32
12
41.7-53.5cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (2)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
JRGP RFLP 2000
12
41.7 cM
53.5 cM
jrgp-2000-12-ip14
2
Hokkaido Morphological 2000
12
21 cM
21 cM
morph-2000-12-3
Associated Ontologies (5)
Trait
mimic response
(TO:0000063)
Plant Structure
vascular leaf
(PO:0009025)
Plant Growth and Development Stage
leaf production stage
(PO:0007133)
Cereal Plant Growth Stage
02-seedling
(GRO:0007047)
Biological Process
biological_process
(GO:0008150)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
960
Literature (12)
Morinaga-T, Fukushima-E., "Heritable characters in rice 1 Abnormal mutant characters and their mode of inheritance",
Sci Bull Fac Agric Kyusyu Imp Univ
, 1943, vol. 10, pp. 301-339
Iwata-N, Omura-T., "Studies on the trisomics in rice plants (Oryza sativa L) III Relation between trisomics and genetic linkage groups",
Japan J Breed
, 1975, vol. 25(6), pp. 363-368
Iwata-N, Omura-T, Satoh-H., "Linkage studies in rice (Oryza sativa L) On some mutants for physiological leaf spots",
J Fac Agr Kyushu Univ
, 1978, vol. 22, pp. 243-251
Yoshimura-A, Iwata-N, Omura-T., "Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L.). III. Marker genes located on chromosomes 2, 3, 4 and 7",
Japan J Breed
, 1982, vol. 32(4), pp. 323-332
Iwata-N, Omura-T., "Studies on the trisomics in rice plants (Oryza sativa L) VI An accomplishment of a trisomic series in japonica rice plants",
Japanese journal of genetics
, 1984, vol. 59(3), pp. 199-204
Khush-G-S, Singh-R, Sur-S-C, Librojo-A-L., "Primary trisomics of rice Origin, morphology, cytology and use in linkage mapping",
Genetics
, 1984, vol. 107, pp. 141-163
Ideta-O, Yoshimura-A, Matsumoto-T, Tsunematsu-H, Mikoda-T, Satoh-H, Iwata-N., "Integration of conventional and RFLP linkage maps in rice. III. On the arrangement of some marker genes and RELP markers",
Japan J Breed
, 1992, vol. 42(Suppl. 2), pp. 126-127
Kishimoto-N, Shimosaka-E, Matsuura-S, Saito-A., "A current RFLP linkage map of rice Alignment of molecular map with the classical map",
RGN
, 1992, vol. 9, pp. 118-124
Ideta-O, Yoshimura-A, Ashikari-M, Iwata-N., "Integration of conventional and RFLP linkage maps in rice. III. Choromosomes 5, 7, 8 and 12",
RGN
, 1994, vol. 11, pp. 116-117
Yoshimura-A, Ideta-O, Iwata-N., "Linkage map of phenotype and RFLP markers in rice",
Plant molecular biology
, 1997, vol. 35, pp. 49-60
Sanchez-A-C, Khush-G-S., "Chromosomal localization of five mutant genes in rice, Oryza sativa, using primary trisomics",
Plant Breeding
, 2000, vol. 119- (1-)., pp. 84-86
Yin-Z, Chen-J, Zeng-L, Goh-M, Leung-H, Khush-G-S, Wang-G-L., "Characterizing rice lesion mimic mutants and identifying a mutant with broad-spectrum resistance to rice blast and bacterial blight",
Molecular plant-microbe interactions : MPMI
, 2000, vol. 13, pp. 869-876
Images (2)
1.
1. Yellow leaf spots on leaf blade. (Photo courtesy A. Yoshimura).
2.
2. Relatively larger reddish brown colored spots on leaves due to lrd7 (spl1) (on right).
SNPs (0)