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Browse Ontology Database by:
Trait
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Plant Structure
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Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
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GenBank Accession
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Type:
Not sequenced
CDS (Protein coding)
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All Species
With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
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Oryza sativa gene "SHL2" (GR:0060880)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060880
Gene Symbol
SHL2
Gene Name
SHOOTLESS 2
Synonyms (5)
sh2
shl2
shootless-2
shl2
shootless-2
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
1
Gene Type
Not sequenced
Has Phenotype
yes
Description
Shoot fails to form after germination, roots grow normally. shl2 are estimated to function in the upstream of OSH1.
Alleles (6)
shl2.1
shl2.2
shl2.3
shl2.4
shl2.5
shl2.6
Germplasm (4)
NA
odm50
odm59
odm64
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1)
Oryza sativa (1)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
1
62-84cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (1)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Hokkaido Morphological 2000
1
62 cM
84 cM
morph-2000-1-ip11
Associated Ontologies (13)
Trait
plant embryo anatomy and morphology trait
(TO:0000064)
Plant Structure
plant embryo
(PO:0009009)
, apical meristem
(PO:0020144)
Plant Growth and Development Stage
whole plant fruit ripening stage
(PO:0007010)
, whole plant fruit ripening complete stage
(PO:0007038)
, inflorescence emergence stage
(PO:0007041)
, whole plant fruit formation stage
(PO:0007042)
Cereal Plant Growth Stage
08-dough stage
(GRO:0007042)
, 06-heading stage
(GRO:0007044)
, 09-mature grain stage
(GRO:0007045)
, 07-milk stage
(GRO:0007046)
Biological Process
organ morphogenesis
(GO:0009887)
, tissue development
(GO:0009888)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
976
Literature (10)
Kitano-H, Tamura-Y, Satoh-H, Nagato-Y., "Hierarchical regulation of organ differentiation during embryogenesis in rice",
Plant Journal.
, 1993, vol. 3- (4-)., pp. 607-610
Hong-S-K, Aoki-T, Kitano-H, Satoh-H, Nagato-Y., "Phenotypic diversity of 188 rice embryo mutants",
Developmental genetics
, 1995, vol. 16, pp. 298-310
Satoh-N, Hong-S-K, Matsuoka-M, Kitano-H, Nagato-Y., "Characterization of shootless mutants in rice",
RGN
, 1997, vol. 14, pp. 145-147
Satoh-N, Hong-S-K, Nishimura-A, Matsuoka-M, Kitano-H, Nagato-Y., "Initiation of shoot apical meristem in rice characterization of four SHOOTLESS genes",
Development (Cambridge, England)
, 1999, vol. 126, pp. 3629-3636
Ito-Y, Eiguchi-M, Kurata-N., "Expression of novel homeobox genes in early embryogenesis in rice",
Biochimica et biophysica acta
, 1999, vol. 1444, pp. 445-450
Ito-M, Sato-Y, Nagasawa-N, Kitano-H, Nagato-Y, Matsuoka-M., "Mapping of two SHOOTLESS genes, SHL1 and SHL2, by RFLP marker analysis",
RGN
, 1999, vol. 16, pp. 39-41
Ito-M, Sato-Y, Nagasawa-N, Kitano-H, Matsuoka-M., "Mapping of two SHOOTLESS genes, SHL1 and SHL2, by RFLP analysis",
Rice Genetics Newslett.
, 1999, vol. 16, pp. 39-41
Satoh-N, Nagato-Y., "SHOOTLESS 2 gene is required for both initiation and maintenance of shoot apical meristem in rice",
RGN
, 2000, vol. 17, pp. 26-28
Satoh-N, Nagato-Y., "SHOOTLESS 2 gene is required for both initiation and maintenance of shoot apical meristem in rice",
Rice Genetics Newslett.
, 2000, vol. 17, pp. 26-28
Satoh-N, Itoh-J-I, Nagato-Y., "The SHOOTLESS2 and SHOOTLESS1 genes are involved in both initiation and maintenance of the shoot apical meristem through regulating the number of indeterminate cells",
Genetics
, 2003, vol. 164, pp. 335-346
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SNPs (0)