Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
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Accession | GR:0060864 | ||||||||
Gene Symbol | SE5 | ||||||||
Gene Name | PHOTOSENSITIVITY 5 | ||||||||
Synonyms (7) |
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E.C. Numbers (0) | |||||||||
Pathway Reactions (1) | Heme oxygenase (decyclizing) | ||||||||
Chromosome No. | 6 | ||||||||
Gene Type | CDS (Protein coding) | ||||||||
Has Phenotype | yes | ||||||||
Description | Earliness due to the loss of photoperiod sensitivity. Earlier than the original cultivar Norin 8 under natural long-day by 15 days. | ||||||||
Curator Comment | The sequenced gene encodes a putative heme oxygenase and is a homologue of hy1 or HO1 gene (At2g26670) in Arabidopsis. In the rice plant with mutant allele, the lack of responses of coleoptile elongation by light pulses and photoreversible phytochromes indicates that Se5 may function in phytochrome chromophore biosynthesis. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 23,852,717-23,857,064bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Hokkaido Morphological 2000 | BNL6.32 | 6 | 44-90cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 2001 | BNL6.32 | 6 | 38.95-52.95cM | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Hokkaido Morphological 2000 | 6 | 44 cM | 90 cM | morph-2000-6-ip22 |
2 | Cornell RFLP 2001 | 6 | 38.95 cM | 52.95 cM | cu-sl-2001-6-ip14 |
3 | Rice japonica MSU6 | Chr. 6 | 23852717 bp | 23857064 bp | grjp2009a-6-GR:0060864 |
Trait | days to heading (TO:0000137), photoperiod sensitivity (TO:0000229), days to maturity (TO:0000469) |
Plant Structure | PO:0006318 (PO:0006318), seed (PO:0009010), portion of meristem tissue (PO:0009013), inflorescence (PO:0009049), coleoptile (PO:0020033), shoot apical meristem (PO:0020148) |
Plant Growth and Development Stage | whole plant fruit ripening complete stage (PO:0007038), inflorescence emergence stage (PO:0007041), stem elongation stage (PO:0007089) |
Cereal Plant Growth Stage | 06-heading stage (GRO:0007044), 09-mature grain stage (GRO:0007045), 04-stem elongation stage (GRO:0007048) |
Cellular Component | plastid (GO:0009536) |
Molecular Function | sequence-specific DNA binding transcription factor activity (GO:0003700), heme oxygenase (decyclizing) activity (GO:0004392) |
Biological Process | heme oxidation (GO:0006788), biological_process (GO:0008150), photoperiodism (GO:0009648), inflorescence development (GO:0010229) |
Environment | sodium chloride regimen (EO:0007048), Magnaporthe grisea (EO:0007226), tissue culture growth media (EO:0007266), rice yellow mottle virus (EO:0007318), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr6 | 23,852,717 | 23,857,064 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr6 | 23,852,717 | 23,857,064 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 23,852,717 | 23,857,064 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr6 | 23,852,717 | 23,857,064 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr6 | 23,852,717 | 23,857,064 | RiceDiversity 44K SNP assay, 34 trait... | 0 |