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Browse Ontology Database by:
Trait
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Plant Structure
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Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
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GenBank Accession
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Type:
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E.g.,
d1
,
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GR:0060184
,
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,
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Oryza sativa gene "RI" (GR:0060756)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060756
Gene Symbol
RI
Gene Name
VERTICILLATE RACHIS
Synonyms (4)
ri
verticillate rachis
ri
verticillate rachis
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
5
Gene Type
Not sequenced
Has Phenotype
yes
Description
Arrangement of panicle branches as a whorl around the basal node of the ear axis.
Alleles (0)
Germplasm (0)
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1)
Oryza sativa (1)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
5
85-85cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (1)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Hokkaido Morphological 2000
5
85 cM
85 cM
morph-2000-5-12
Associated Ontologies (6)
Trait
primary branching of inflorescence
(TO:0000052)
, panicle type
(TO:0000089)
Plant Structure
primary inflorescence branch
(PO:0006321)
, inflorescence
(PO:0009049)
Plant Growth and Development Stage
sporophyte reproductive stage
(PO:0007130)
Biological Process
multicellular organismal development
(GO:0007275)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
682
Literature (13)
Takahashi-M., "Linkage groups and gene schemes of some striking morphological characters in Japanese rice",
Symp Rice Genet Cytogenet, Internatl Rice Res Inst (1963) Elsevier, Amsterdam
, 1964, pp. 215-236
Iwata-N, Omura-T., "Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L). II. Linkage groups corresponding to the chromosomes 5,6,8,9,10 and 11",
Sci Bull Fac Agr Kyushu Univ
, 1971, vol. 25(3.4), pp. 137-153
Iwata-N, Omura-T., "Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L) I Linkage groups corresponding to the chromosome 1, 2, 3 and 4",
Japan J Breed
, 1971, vol. 21(1), pp. 19-28
Iwata-N, Omura-T., "Linkage studies in rice (Oryza sativa L) On some mutants derived from chronic gamma irradiation",
J Fac Agr Kyushu Univ
, 1977, vol. 21, pp. 117-127
Iwata-N, Satoh-H, Omura-T., "Linkage studies in rice Linkage groups for 6 genes newly described",
Japan J Breed
, 1977, vol. 27(Suppl 1), pp. 250-251
Sastry-M-V-S, Seetharaman-R., "Inheritance in rice",
Indian J Genet, Plant Breed
, 1980, vol. 40(3), pp. 573-577
Iwata-N, Satoh-H, Omura-T., "Linkage analysis by use of trisomics in rice (Oryza sativa L.). IV. Linkage groups locating on chromosomes 2 and 10",
Japanese Journal of Breeding
, 1981, vol. 31(Suppl.1), pp. 66-67
Iwata-N, Satoh-H, Omura-T., "Studies on the trisomics in rice plants (Oryza sativa L). VII. On some marker genes located on chromosome 2 and their sequence on the linkage map",
J Fac Agr Kyushu Univ
, 1984, vol. 29(2.3), pp. 139-144
Iwata-N, Omura-T., "Studies on the trisomics in rice plants (Oryza sativa L) VI An accomplishment of a trisomic series in japonica rice plants",
Japanese journal of genetics
, 1984, vol. 59(3), pp. 199-204
Kinoshita-T., "Gene analysis and linkage map",
Biology of Rice. Tsunoda-S, Takahashi-N (eds.), JSSP/Elsevier, Tokyo.
, 1984, pp. 187-274
Satoh-H, Iwata-N., "Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1)",
Japanese Journal of Breeding
, 1990, vol. 40(Suppl.2), pp. 268-269
Satoh-H., "Exploitation and identification on endosperm characters",
Exploitation and Identification of Rice Gene Resources N Iwata, ed (Report of Grant-in-Aid for Scientific Research)
, 1990, pp. 54-75
Murai-M, Iizawa-M., "Effects of major genes controlling morphology of panicle in rice",
Breed Sci
, 1994, vol. 44, pp. 247-255
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