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Release Notes
Browse Ontology Database by:
Trait
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Plant Structure
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Growth Stage
Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
GO:Cellular Component
GO:Molecular Function
GO:Biological Process
EO:Environment
GenBank Accession
Gramene Protein Accession
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Type:
Not sequenced
CDS (Protein coding)
rRNA (Ribosomal RNA)
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Species:
Aegilops
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All Species
With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
Or
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Oryza sativa gene "RD" (GR:0060733)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060733
Gene Symbol
RD
Gene Name
RED PERICARP AND SEED COAT
Synonyms (4)
Rd
Red pericarp and seed coat
Rd
Red pericarp and seed coat
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
1
Gene Type
Not sequenced
Has Phenotype
yes
Description
So-called red rice. Dark red pericarp and seed coat are expressed when Rd coexists with Rc.
Alleles (1)
Rd.1
Germplasm (12)
L63
H112
A5
L75
D44
N133
N135
H18
I14
I33
A107
H73
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1)
Oryza sativa (1)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
1
65-65cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (1)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Hokkaido Morphological 2000
1
65 cM
65 cM
morph-2000-1-9
Associated Ontologies (13)
Trait
seed coat color
(TO:0000190)
, endosperm color
(TO:0000487)
Plant Structure
seed coat
(PO:0009088)
, endosperm
(PO:0009089)
Plant Growth and Development Stage
whole plant fruit ripening stage
(PO:0007010)
, whole plant fruit ripening complete stage
(PO:0007038)
, inflorescence emergence stage
(PO:0007041)
, whole plant fruit formation stage
(PO:0007042)
Cereal Plant Growth Stage
08-dough stage
(GRO:0007042)
, 06-heading stage
(GRO:0007044)
, 09-mature grain stage
(GRO:0007045)
, 07-milk stage
(GRO:0007046)
Biological Process
flavonoid metabolic process
(GO:0009812)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
467
Literature (3)
Nagao-S., "Genic analysis and linkage relationship of characters in rice",
Advances in genetics
, 1951, vol. 4, pp. 181-212
Nagao-S, Takahashi-M., "Trial construction of twelve linkage groups in Japanese rice (Genetical studies on rice plant, XXVII)",
J Fac Agr Hokkaido Univ
, 1963, vol. 53(1), pp. 72-130
Kinoshita-T., "Gene analysis and linkage map",
Biology of Rice. Tsunoda-S, Takahashi-N (eds.), JSSP/Elsevier, Tokyo.
, 1984, pp. 187-274
Images (2)
1.
1. Matured red rice in Akamai background.
2.
2. Red colored pericarp caused by complementary action of Rc and Rd (on top left). Brown colored pericarp due to Rc (on bottom right). No typical phenotype due to Rd (on top right). Normal (on bottom left).
SNPs (0)