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Browse Ontology Database by:
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In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
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GR:0060184
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Oryza sativa gene "R45S1" (GR:0060715)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060715
Gene Symbol
R45S1
Gene Name
45S RIBOSOMAL DNA 1
Synonyms (6)
rDNA1
r45s
R45s1
45S ribosomal DNA-1
R45s1
45S ribosomal DNA-1
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
9
Gene Type
Not sequenced
Has Phenotype
yes
Description
under curation
Alleles (0)
Germplasm (0)
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (2)
Oryza sativa x Oryza longistaminata (2)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Cornell RFLP 1994
BNL6.32
9
0-0cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Cornell RFLP 2001
BNL6.32
9
9.5-9.5cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (2)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Cornell RFLP 2001
9
9.5 cM
9.5 cM
cu-sl-2001-9-3
2
Cornell RFLP 1994
9
0 cM
0 cM
cu-sl-1994-9-2
Associated Ontologies (1)
Molecular Function
rDNA binding
(GO:0000182)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
860
Literature (9)
McCouch-S-R, Kochert-G, Yu-Z-H, Wang-Z-Y, Khush-G-S, Coffman-W-R, Tanksley-S-D., "Molecular mapping of rice chromosomes",
Theoretical and applied genetics
, 1988, vol. 76, pp. 815-829
Matsuura-S, Yano-M, Saito-A., "Location of two rDNA genes by linkage analysis in rice",
Rice Genetics Newsletter
, 1991, vol. 8, pp. 136-139
Matsuura-S, Yano-M, Saito-A., "Linkage analysis of two ribosomal DNA genes in rice",
Japan J Breed
, 1991, vol. 41(Suppl 1), pp. 320-321
Chung-M-C, Ning-C-N, Wu-H-K., "Localization of ribosomal RNA genes on rice chromosome",
Bot Bull Acad Sinica
, 1993, vol. 34, pp. 43-55
Tanksley-S-D, Fulton-T-M, McCouch-S-R., "Linkage map of rice (Oryza sativa) (2N24)",
Genetic Maps, Locus Maps of Complex Genomes, Book 6. Plants. S.J. OBrien ed. Cold Spring Harbour Lab. Press.
, 1993, pp. 61-79
Causse-M-A, Fulton-T-M, Cho-Y-G, Ahn-S-N, Chunwongse-J, Wu-K, Xiao-J, Yu-Z, Ronald-P-C, Harrington-S-E, Second-G, McCouch-S-R, Tanksley-S-D., "Saturated molecular map of the rice genome based on an interspecific backcross population",
Genetics
, 1994, vol. 138, pp. 1251-1274
Fukui-K, Ohmido-N, Khush-G-S., "Variability in rDNA loci in the genus Oryza detected through fluorescence in situ hybridization",
Theoretical and applied genetics
, 1994, vol. 87, pp. 893-899
Shishido-R, Sano-Y, Fukui-K., "The third 45S rDNA locus in O. eichingeri (CC) newly detected by an improved FISH method",
Rice Genetics Newsletter
, 1996, vol. 13, pp. 84-85
Shishido-R, Sano-Y, Fukui-K., "Ribosomal DNAs: an exception to the conservation of gene order in rice genomes",
Molecular & General Genetics
, 2000, vol. 263, pp. 586-591
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