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Browse Ontology Database by:
Trait
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Plant Structure
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Growth Stage
Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
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E.g.,
d1
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GR:0060184
,
flower*
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*tillering stage*
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Oryza sativa gene "PI5" (GR:0060632)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060632
Gene Symbol
PI5
Gene Name
PYRICULARIA ORYZAE RESISTANCE 5
Synonyms (6)
RMg22
Pi5(t)
Pi5
Magnaporthe grisea resistance-5
Pi5
Magnaporthe grisea resistance-5
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
9
Gene Type
Not sequenced
Has Phenotype
yes
Description
Resistant to rice blast disease.
Alleles (1)
RMg22.1 (Pi5.1)
Germplasm (1)
Moroberekan
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (3)
Oryza sativa (2)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Cornell SSR 2001
BNL6.32
9
14.5-26.3cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
JRGP RFLP 2000
BNL6.32
9
29-40.8cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Oryza sativa x Oryza longistaminata (1)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Cornell RFLP 2001
BNL6.32
9
28.45-40.25cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (3)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Cornell RFLP 2001
9
28.45 cM
40.25 cM
cu-sl-2001-9-ip3
2
JRGP RFLP 2000
9
29 cM
40.8 cM
jrgp-2000-9-ip9
3
Cornell SSR 2001
9
14.5 cM
26.3 cM
cu-dh-2001-9-ip4
Associated Ontologies (9)
Trait
leaf blast disease resistance
(TO:0000468)
Plant Structure
vascular leaf
(PO:0009025)
Plant Growth and Development Stage
LP.05 five leaves visible stage
(PO:0007065)
, 2 formation of axillary shoot stage
(PO:0007073)
, LP.06 six leaves visible stage
(PO:0007123)
, leaf production stage
(PO:0007133)
Cereal Plant Growth Stage
02-seedling
(GRO:0007047)
, 03-tillering stage
(GRO:0007049)
Biological Process
response to fungus
(GO:0009620)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
630
Literature (7)
Wang-G-L, Mackill-D-J, Bonman-J-M, McCouch-S-R, Champoux-M-C, Nelson-R-J., "RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistance rice cultivar",
Genetics
, 1994, vol. 136, pp. 1421-1434
Causse-M-A, Fulton-T-M, Cho-Y-G, Ahn-S-N, Chunwongse-J, Wu-K, Xiao-J, Yu-Z, Ronald-P-C, Harrington-S-E, Second-G, McCouch-S-R, Tanksley-S-D., "Saturated molecular map of the rice genome based on an interspecific backcross population",
Genetics
, 1994, vol. 138, pp. 1251-1274
Inukai-T, Nelson-R-J, Zeigler-R-S, Sarkarung-S, Mackill-D-J, Bonman-J-M, Takamure-I, Kinoshita-T., "Genetic analysis of blast resistance in tropical rice cultivars using near-isogenic lines",
Rice Genetics, III. IRRI, Manila, Philippines. Proceedings of the Third International Rice Genetics Symposium, ed by G S Khush
, 1996, pp. 447-450
Inukai-T, Zeigler-R-S, Sarkarung-S, Bronson-M, Dung-L-V, Kinoshita-T, Nelson-R-J., "Development of pre-isogenic lines for rice blast-resistance by marker-aided selection from a recombinant inbred population",
Theoretical and applied genetics
, 1996, vol. 93, pp. 560-567
Chen-X, Temnykh-S, Xu-Y, Cho-Y-G, McCouch-S-R., "Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.)",
Theoretical and applied genetics
, 1997, vol. 95, pp. 553-567
Inukai-T, Sako-A., "Determination of chromosomal location of blast resistance gene in West African upland cultivar Moroberekan",
Breed Sci
, 1997, vol. 47(Suppl. 1), p. 268
Hittalmani-S, Parco-A, Mew-T-V, Zeigler-R-S, Huang-N., "Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice",
Theoretical and applied genetics
, 2000, vol. 100, pp. 1121-1128
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