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Browse Ontology Database by:
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Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
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E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
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Oryza sativa gene "PGI1" (GR:0060602)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060602
Gene Symbol
PGI1
Gene Name
PHOSPHOGLUCOISOMERASE 1
Synonyms (7)
Pgia
Pgi_1
Pgi1
Phosphoglucoisomerase-1
Pgi_1
Pgi1
Phosphoglucoisomerase-1
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
3
Gene Type
Not sequenced
Has Phenotype
yes
Description
under curation
Alleles (0)
Germplasm (0)
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (3)
Oryza sativa (3)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Cornell SSR 2001
BNL6.32
3
198-198cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Hokkaido Morphological 2000
BNL6.32
3
176-176cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
QTL
CIRAD IR64/Azu DH QTL 2003
BNL6.32
3
232.2-232.2cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (3)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Hokkaido Morphological 2000
3
176 cM
176 cM
morph-2000-3-23
2
Cornell SSR 2001
3
198 cM
198 cM
cu-dh-2001-3-49
3
CIRAD IR64/Azu DH QTL 2003
3
232.2 cM
232.2 cM
sac2003a-126
Associated Ontologies (1)
Molecular Function
glucose-6-phosphate isomerase activity
(GO:0004347)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
567
Literature (14)
Second-G., "Origin of the genic diversity of cultivated rice (Oryza spp.) study of the polymorphism scored at 40 isozyme loci",
Japanese journal of genetics
, 1982, vol. 57(1), pp. 25-57
Glaszmann-J-C., "A verietal classification of Asian cultivated rice (Oryza sativa L.) based on isozyme polymorphism",
Rice Genetics. IRRI, Manila, Philippines
, 1986, pp. 83-90
Ranjhan-S, Glaszmann-J-C, Khush-G-S., "Localization of Pgi-1, Sdh-1, Est-9 and Adh-1 on rice chromosomes by trisomic analysis",
Rice Genetics Newsletter
, 1986, vol. 3, pp. 56-58
Ranjhan-S, Glaszmann-J-C, Ramirez-D-A, Khush-G-S., "Choromosomal localization of four isozyme loci by trisomic analysis in rice (Oryza sativa L.)",
Theoretical and applied genetics
, 1988, vol. 75, pp. 541-545
Ishikawa-R, Morishima-H, Mori-K, Kinoshita-T., "Choromosomal analysis of isozyme loci and the allelic expression at cellular level in rice. Genetical studies on rice plant, XCVII",
J Fac Agr Hokkaido Univ
, 1989, vol. 64(1), pp. 85-98
Ishikawa-R., "Integration of isozyme genes on chromosome 12 into a linkage map",
Rice Genetics Newsletter
, 1991, vol. 8, pp. 100-101
Ishikawa-R, Morishima-H, Kinoshita-T., "Linkage analysis and application of isozyme genes in rice",
Rice Genetics, II. IRRI, Manila, Philippines
, 1991, pp. 127-136
Ishikawa-R, Morishima-H, Kinoshita-T, Harada-T, Niizeki-M, Saito-K., "Linkage analysis of nine isozyme genes on the conventional linkage map in rice",
Japanese Journal of Breeding
, 1991, vol. 41(2), pp. 265-272
Nozue-F, Umeda-M, Nagamura-Y, Minobe-Y, Uchimiya-H., "Molecular cloning and expression analysis of rice phosphoglucose (PGI) genes",
Breed Sci
, 1994, vol. 44(Suppl. 1), p. 29
Malik-S-S, Brar-D-S, Khush-G-S., "Identification of two new null alleles in traditional rice germplasm of Philippines",
Rice Genetics Newsletter
, 1995, vol. 12, pp. 206-207
Huang-N, Parco-A, Mew-T, Magpantay-G, McCouch-S-R, Guiderdoni-E, Xu-J, Subudhi-P, Angeles-E-R, Khush-G-S, Xu-J-C., "RFLP mapping of isozymes, RAPD and QTLs for grain shape, brown planthopper resistance in a doubled haploid rice population",
Mol Breed
, 1997, vol. 3, pp. 105-113
Sanchez-A-C, Khush-G-S., "Inheritance and linkage relationships of twenty-one genes in rice, Oryza sativa. L",
SABRAO J
, 1998, vol. 29(2), pp. 51-60
Gao-L, Wei-C, Yang-Q, Hong-D, Ge-S., "Intra-population genetic structure of Oryza rufipogon Griff. in Yunnan, China",
J. Plant Res.
, 2001, vol. 114, pp. 107-113
Gao-L-Z, Ge-S, Hong-D-Y., "High Levels of Genetic Differentiation of Oryza officinalis Wall. ex Watt. From China",
Journal of heredity
, 2001, vol. 92, pp. 511-516
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