Oryza sativa gene "D35" (GR:0060213)

Alleles (1)

D35

Germplasm (1)

Nipponbare

Sequences (3)

Protein

Gramene Protein:

Q5Z5S0

Nucleotide (DNA)

Rice Ensembl Gene:	LOC_Os06g37300
IRGSP Gene:	Os06g0569500

Map Positions (1)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 6

22,019,843-22,027,149bp

View Comparative Map

Details

CMap Preview

Gene Map Positions (1)

Map Position [ View in Marker DB ]
#	Map Set Name	Linkage Group	Start Position	Stop Position	CMap Feature Acc
1	Rice japonica MSU6	Chr. 6	22019843 bp	22027149 bp	grjp2009a-6-GR:0060213

Associated Ontologies (19)

Trait	plant height (TO:0000207)
Plant Structure	stem (PO:0009047), inflorescence (PO:0009049), leaf lamina (PO:0020039), leaf sheath (PO:0020104), inflorescence axis (PO:0020122)
Plant Growth and Development Stage	whole plant flowering stage (PO:0007016), sporophyte vegetative stage (PO:0007134)
Cereal Plant Growth Stage	A-vegetative stage (GRO:0007139), 6.1-flowering stage (GRO:0007151)
Cellular Component	cytoplasmic membrane-bounded vesicle (GO:0016023)
Molecular Function	ent-kaurene oxidation to kaurenoic acid (GO:0010241)
Biological Process	gibberellin biosynthetic process (GO:0009686), electron transport chain (GO:0022900), secretion by cell (GO:0032940)
Environment	sodium chloride regimen (EO:0007048), Magnaporthe grisea (EO:0007226), Xanthomonas oryzae pv. oryzae (EO:0007257), unknown environment (EO:0007403)

Database Cross-References (1)

Oryzabase: 68

Literature (14)

Suge-H, Murakami-Y., "Occurrence of a rice mutant deficient in gibberellin-like substances", Plant Cell Physiol., 1968, vol. 9, pp. 411-414
Shinbashi-N, Kinoshita-T, Takahashi-M., "Gibberellin metabolism by the casual genes for 'Hosetsu-dwarf' and 'Tanginbozu-dwarf' (Preliminary report). - Genetical studies on rice plant. LXIII", Mem Fac Agr Hokkaido Univ, 1975, vol. 9(2), pp. 201-207
Suge-H., "Complementary genes for height inheritance in relation to gibberellin production in rice plants", Japanese journal of genetics, 1975, vol. 50(2), pp. 121-131
Shinbashi-N, Kinoshita-T, Takahashi-M, Hasebe-K., "Genetic aspects of two dwarfs Hosetsu-dwarf and Kotake-tamanishiki, and their character expressions. -Genetical studies on rice plant. LXVI", Mem Fac Agr Hokkaido Univ, 1976, vol. 10(1), pp. 69-75
Suge-H., "The genetic control of gibberellin production in rice", Japanese journal of genetics, 1978, vol. 53(3), pp. 199-207
Kinoshita-T, Shinbashi-N., "Identification of dwarf genes and their character expression in the isogenic background", Japanese Journal of Breeding, 1982, vol. 32(3), pp. 219-231
Murai-M, Shinbashi-N, Kinoshita-T., "Classification of nineteen kinds of near-isogenic dwarf lines due to the characters of internodes-genetical studies on rice plant LXXXIV", Fac. Agric. Hokkaido. Univ., 1982, vol. 61, pp. 73-88
Kinoshita-T., "Gene analysis and linkage map", Biology of Rice. Tsunoda-S, Takahashi-N (eds.), JSSP/Elsevier, Tokyo., 1984, pp. 187-274
Suge-H., "Survey of endogenous gibberellins in rice lines having different dwarfing genes and in autoteraploid lines", Japan J Breed, 1990, vol. 40(1), pp. 21-31
Kobayashi-M, MacMillan-J, Phinney-B, Gaskin-P, Spray-C-R, Hedden-P., "Gibberellin biosynthesis: metabolic evidence for three steps in the early 13-hydroxylation pathway of rice", Phytochemistry, 2000, vol. 55, pp. 317-321
Tatsumi-T, Itoh-H, Ashikari-M, Kitano-H, Tamura-K, Ichihara-S, Matsuoka-M., "A rice dwarf mutant, Tan-ginbozu (d35), is caused by a mutation of the kaurene oxidase gene, a member of gibberellin biosynthesis", Breeding Res., 2002, vol. 4(Suppl. 2), p. 108
Itoh-H, Tatsumi-T, Sakamoto-T, Otomo-K, Toyomasu-T, Kitano-H, Ashikari-M, Ichihara-S, Matsuoka-M., "A Rice Semi-Dwarf Gene, Tan-Ginbozu ( D35 ), Encodes the Gibberellin Biosynthesis Enzyme, ent -Kaurene Oxidase", Plant molecular biology, 2004, vol. 54, pp. 533-547
Takeda-S, Tomooka-J, Taura-S, Sato-M, Ichitani-K., "Interaction between the dwarfing gene locus d35 and QTL controlling culm length in rice", Breeding Res., 2004, vol. 6 (Suppl.2), p. 272
Sakamoto-T, Miura-K, Itoh-H, Tatsumi-T, Ueguchi-Tanaka-M, Ishiyama-K, Kobayashi-M, Agrawal-G-K, Takeda-S, Abe-K, Miyao-A, Hirochika-H, Kitano-H, Ashikari-M, Matsuoka-M., "An overview of gibberellin metabolism enzyme genes and their related mutants in rice", Plant physiology, 2004, vol. 134, pp. 1642-1653

SNPs (68)

Chr	Start	Stop	Exp	Num. SNP Positions
chr6	22,019,843	22,027,149	~160K SNPs x 20 accessions (McNally 2...	0
chr6	22,019,843	22,027,149	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr6	22,019,843	22,027,149	Huang X, et al, Nat Genetics 2010 Nov...	34	Search for SNPs
chr6	22,019,843	22,027,149	RiceDiversity 44K SNP assay, 34 trait...	34	Search for SNPs
chr6	22,019,843	22,027,149	RiceDiversity 44K SNP assay, 34 trait...	0

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