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Browse Ontology Database by:
Trait
|
Plant Structure
|
Growth Stage
Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
GO:Cellular Component
GO:Molecular Function
GO:Biological Process
EO:Environment
GenBank Accession
Gramene Protein Accession
All Fields
Type:
Not sequenced
CDS (Protein coding)
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Sequenced Gene Loci
All Gene Types
Species:
Aegilops
Aegilops x Triticum
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Zea mays subsp. mays (Maize)
All Species
With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
Or
view help
Oryza sativa gene "D6" (GR:0060189)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060189
Gene Symbol
D6
Gene Name
DWARF EBISUMOCHI DWARF
Synonyms (7)
d34
ebisumochi dwarf or tankanshirazasa dwarf
dwf6
d6
dwarf-6
d6
dwarf-6
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
7
Gene Type
Not sequenced
Has Phenotype
yes
Description
Dwarf, with sinuous panicle neck, lopped leaf blades and shortened sheaths.
Alleles (1)
dwf6.1
Germplasm (3)
A28
H10
AC36
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (2)
Oryza sativa (2)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
7
0-0cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
JRGP RFLP 2000
BNL6.32
7
0-19.3cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (2)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
JRGP RFLP 2000
7
0 cM
19.3 cM
jrgp-2000-7-ip17
2
Hokkaido Morphological 2000
7
0 cM
0 cM
morph-2000-7-1
Associated Ontologies (16)
Trait
panicle type
(TO:0000089)
, leaf shape
(TO:0000492)
, stem length
(TO:0000576)
Plant Structure
vascular leaf
(PO:0009025)
, stem
(PO:0009047)
, inflorescence
(PO:0009049)
Plant Growth and Development Stage
booting stage
(PO:0007014)
, whole plant fruit ripening complete stage
(PO:0007038)
, inflorescence emergence stage
(PO:0007041)
, stem elongation stage
(PO:0007089)
Cereal Plant Growth Stage
06-heading stage
(GRO:0007044)
, 09-mature grain stage
(GRO:0007045)
, 04-stem elongation stage
(GRO:0007048)
, 05-booting stage
(GRO:0007148)
Biological Process
multicellular organismal development
(GO:0007275)
, unidimensional cell growth
(GO:0009826)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
810
Literature (13)
Morinaga-T, Fukushima-E., "Heritable characters in rice 1 Abnormal mutant characters and their mode of inheritance",
Sci Bull Fac Agric Kyusyu Imp Univ
, 1943, vol. 10, pp. 301-339
Nagao-S, Takahashi-M., "On the nature of genes for the dwarf of rice plant.-Genetical studies on rice plant. Vlll.-",
Biology (Seibutsu )
, 1946, vol. 1(1), pp. 27-36
Nagao-S., "Genic analysis and linkage relationship of characters in rice",
Advances in genetics
, 1951, vol. 4, pp. 181-212
Nagao-S, Takahashi-M., "Some genes responsible for yellow, brown and black color glume -Genetical studies on rice plant, XVI",
Japan J Breed
, 1954, vol. 4(1), pp. 25-30
Nagao-S, Takahashi-M., "Genetical studies on rice plant, XVlll. Some histological and genetical observations on cleistogamous spikelets",
Japan. J. Breed.
, 1954, vol. 4(3), pp. 135-139
Nagao-S, Takahashi-M., "Trial construction of twelve linkage groups in Japanese rice (Genetical studies on rice plant, XXVII)",
J Fac Agr Hokkaido Univ
, 1963, vol. 53(1), pp. 72-130
Takahashi-M., "Linkage groups and gene schemes of some striking morphological characters in Japanese rice",
Symp Rice Genet Cytogenet, Internatl Rice Res Inst (1963) Elsevier, Amsterdam
, 1964, pp. 215-236
Iwata-N, Satoh-H, Omura-T., "Linkage analysis by use of trisomics in rice (Oryza sativa L) IV Linkage groups locating on chromosomes 2 and 10",
Japan J Breed
, 1981, vol. 31(Suppl 1), pp. 66-67
Murai-M, Shinbashi-N, Kinoshita-T., "Classification of nineteen kinds of near-isogenic dwarf lines due to the characters of internodes-genetical studies on rice plant LXXXIV",
Fac. Agric. Hokkaido. Univ.
, 1982, vol. 61, pp. 73-88
Kinoshita-T., "Gene analysis and linkage map",
Biology of Rice. Tsunoda-S, Takahashi-N (eds.), JSSP/Elsevier, Tokyo.
, 1984, pp. 187-274
Satoh-H, Iwata-N., "Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1)",
Japan J Breed
, 1990, vol. 40(Suppl. 2), pp. 268-269
Ideta-O, Yoshimura-A, Ashikari-M, Iwata-N., "Integration of conventional and RFLP linkage maps in rice. III. Choromosomes 5, 7, 8 and 12",
RGN
, 1994, vol. 11, pp. 116-117
Yoshimura-A, Ideta-O, Iwata-N., "Linkage map of phenotype and RFLP markers in rice",
Plant molecular biology
, 1997, vol. 35, pp. 49-60
Images (2)
1.
1. Lop-leafed dwarf at maturity.
2.
2. Dwarf with sinuous panicle neck, lopped leaf blades and shortened sheaths.
SNPs (0)