![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
Gene Home |
Search |
|
Submit |
Help |
Tutorial |
FAQ | Release Notes
Oryza sativa gene "D3" (GR:0060186) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Accession | GR:0060186 | ||||||||
| Gene Symbol | D3 | ||||||||
| Gene Name | DWARF BUNKETSUWAITO TILLERING | ||||||||
| Synonyms (7) |
|
||||||||
| E.C. Numbers (0) | |||||||||
| Pathway Reactions (0) | |||||||||
| Chromosome No. | 6 | ||||||||
| Gene Type | CDS (Protein coding) | ||||||||
| Has Phenotype | yes | ||||||||
| Description | Dwarf with many fine tillers and slender leaves. Map-based cloning of the D3 gene revealed that it encodes an F-box leucne-rich region (LRR) protein orthologous to Arabidopsis MAX2/ORE9. | ||||||||
| Curator Comment | D3 was initially mapped to the end of chromosome 4, however, after fine-mapping, D3 locus is delimited in the 2.5cM region between RM5199 (10.4cM) and RM (12.9cM) on chromosome 6. |
Alleles (2) Sequences (4) | Protein |
|
||||||
|---|---|---|---|---|---|---|---|
| Nucleotide (DNA) |
|
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,779,716-2,784,272bp | View Comparative Map | |||
|
||||||||
Gene Map Positions (1) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | Rice japonica MSU6 | Chr. 6 | 2779716 bp | 2784272 bp | grjp2009a-6-GR:0060186 |
Associated Ontologies (27) | Trait | tiller number (TO:0000346), leaf width (TO:0000370), stem length (TO:0000576) |
| Plant Structure | axillary shoot system (PO:0006343), vascular leaf (PO:0009025), stem (PO:0009047) |
| Plant Growth and Development Stage | whole plant fruit ripening stage (PO:0007010), booting stage (PO:0007014), whole plant fruit ripening complete stage (PO:0007038), inflorescence emergence stage (PO:0007041), whole plant fruit formation stage (PO:0007042), LP.05 five leaves visible stage (PO:0007065), 2 formation of axillary shoot stage (PO:0007073), stem elongation stage (PO:0007089), LP.06 six leaves visible stage (PO:0007123), leaf production stage (PO:0007133) |
| Cereal Plant Growth Stage | 08-dough stage (GRO:0007042), 06-heading stage (GRO:0007044), 09-mature grain stage (GRO:0007045), 07-milk stage (GRO:0007046), 02-seedling (GRO:0007047), 04-stem elongation stage (GRO:0007048), 03-tillering stage (GRO:0007049), 05-booting stage (GRO:0007148) |
| Biological Process | multicellular organismal development (GO:0007275) |
| Environment | Magnaporthe grisea (EO:0007226), unknown environment (EO:0007403) |
Associated QTL (0)
Database Cross-References (1) Literature (8) Images (2) 1.
|
1. Tillering dwarf of an isogenic line (d3, d4, d5) in the ‘Shiokari’ background (about 40cm in height). |
2.
|
2. Increased tillering dwarf plant with slender and small leaves (on right). |
SNPs (13) | Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 2,779,716 | 2,784,272 | ~160K SNPs x 20 accessions (McNally 2... | 5 | Search for SNPs |
| chr6 | 2,779,716 | 2,784,272 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr6 | 2,779,716 | 2,784,272 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
| chr6 | 2,779,716 | 2,784,272 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
| chr6 | 2,779,716 | 2,784,272 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
