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Release Notes
Browse Ontology Database by:
Trait
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Plant Structure
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Growth Stage
Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
GO:Cellular Component
GO:Molecular Function
GO:Biological Process
EO:Environment
GenBank Accession
Gramene Protein Accession
All Fields
Type:
Not sequenced
CDS (Protein coding)
rRNA (Ribosomal RNA)
tRNA (Transfer RNA)
Pseudogene (non-functional)
Not classified
miRNA (MicroRNA)
siRNA (Small interfering RNA)
Sequenced Gene Loci
All Gene Types
Species:
Aegilops
Aegilops x Triticum
Agropyron
Avena (Oat)
Dasypyrum
Elymus (Wild rye)
Hordeum (Barley)
Lophopyrum
Oryza sativa (Rice)
Phalaris
Secale
Sorghum bicolor (Sorghum)
Thinopyrum
Triticum
Zea mays subsp. mays (Maize)
All Species
With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
Or
view help
Oryza sativa gene "BL3" (GR:0060084)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060084
Gene Symbol
BL3
Gene Name
BROWN LEAF SPOT 3
Synonyms (6)
brown leaf spot-3
bl3
lrd3
lesion resembling disease-3
lrd3
lesion resembling disease-3
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
6
Gene Type
Not sequenced
Has Phenotype
yes
Description
Brown spots on leaves begin to develop after panicle emergence, by maturity extend to surface of glumes. Similar to bl1.
Alleles (1)
lrd3.1
Germplasm (7)
H128
H129
H360
H361
H447
H611
H612
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1)
Oryza sativa (1)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
6
55-55cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (1)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Hokkaido Morphological 2000
6
55 cM
55 cM
morph-2000-6-16
Associated Ontologies (14)
Trait
mimic response
(TO:0000063)
, glume color
(TO:0000221)
, leaf color
(TO:0000326)
Plant Structure
vascular leaf
(PO:0009025)
, seed coat
(PO:0009088)
Plant Growth and Development Stage
whole plant fruit ripening stage
(PO:0007010)
, whole plant fruit ripening complete stage
(PO:0007038)
, inflorescence emergence stage
(PO:0007041)
, whole plant fruit formation stage
(PO:0007042)
Cereal Plant Growth Stage
08-dough stage
(GRO:0007042)
, 06-heading stage
(GRO:0007044)
, 09-mature grain stage
(GRO:0007045)
, 07-milk stage
(GRO:0007046)
Biological Process
chlorophyll catabolic process
(GO:0015996)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
756
Literature (3)
Nagao-S, Takahashi-M, Kinoshita-T., "New members of “wx”and“d1”linkage groups in rice",
Japan. J. Breed.
, 1966, vol. 16(1), p. 60
Takahashi-M, Kinoshita-T, Takeda-K., "Character expression and causal genes of some mutants in rice plant. (Genetical studies on rice plant, XXXIII)",
J Fac Agr Hokkaido Univ
, 1968, vol. 55(4), pp. 496-512
Kinoshita-T., "Gene analysis and linkage map",
Biology of Rice. Tsunoda-S, Takahashi-N (eds.), JSSP/Elsevier, Tokyo.
, 1984, pp. 187-274
Images (0)
SNPs (0)