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Oryza sativa gene "BC1" (GR:0060068) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
|---|---|---|---|---|---|---|---|
| Accession | GR:0060068 | ||||||
| Gene Symbol | BC1 | ||||||
| Gene Name | BRITTLE CULM 1 | ||||||
| Synonyms (5) |
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| E.C. Numbers (0) | |||||||
| Pathway Reactions (0) | |||||||
| Chromosome No. | 3 | ||||||
| Gene Type | CDS (Protein coding) | ||||||
| Has Phenotype | yes | ||||||
| Description | Leaves, culms, and panicles are so brittle in both green and mature stages that they break off at the slightest pressure. Comparatively lower content of alpha-cellulose in its cell wall. No noticeable differences in water, crude protein, crude fiber, silica and pentosan content from normal. |
Sequences (6) | Protein |
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| Nucleotide (DNA) |
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Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (3) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 17,259,006-17,261,770bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Hokkaido Morphological 2000 | BNL6.32 | 3 | 108-108cM | View Comparative Map | |||
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| JRGP RFLP 2000 | BNL6.32 | 3 | 88.5-105.7cM | View Comparative Map | ||||
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Gene Map Positions (3) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | JRGP RFLP 2000 | 3 | 88.5 cM | 105.7 cM | jrgp-2000-3-ip1 |
| 2 | Hokkaido Morphological 2000 | 3 | 108 cM | 108 cM | morph-2000-3-17 |
| 3 | Rice japonica MSU6 | Chr. 3 | 17259006 bp | 17261770 bp | grjp2009a-3-GR:0060068 |
Associated Ontologies (24) | Trait | node shattering (TO:0000061), leaf shattering (TO:0000108) |
| Plant Structure | sclerenchyma cell (PO:0000077), root (PO:0009005), portion of vascular tissue (PO:0009015), vascular leaf (PO:0009025), stem (PO:0009047), inflorescence (PO:0009049), leaf lamina (PO:0020039), leaf sheath (PO:0020104) |
| Plant Growth and Development Stage | whole plant fruit ripening stage (PO:0007010), whole plant fruit ripening complete stage (PO:0007038), inflorescence emergence stage (PO:0007041), whole plant fruit formation stage (PO:0007042) |
| Cereal Plant Growth Stage | 08-dough stage (GRO:0007042), 06-heading stage (GRO:0007044), 09-mature grain stage (GRO:0007045), 07-milk stage (GRO:0007046) |
| Cellular Component | secondary cell wall (GO:0009531) |
| Biological Process | lignin metabolic process (GO:0009808), cell wall modification involved in abscission (GO:0009830), secondary cell wall biogenesis (GO:0009834) |
| Environment | sodium chloride regimen (EO:0007048), unknown environment (EO:0007403) |
Associated QTL (0)
Database Cross-References (1) Literature (13) Images (3) 1.
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1. Exceptionally fragile plant parts. |
2.
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2. Brittleness in leaf and stem (on right), and normal type (on left). |
3.
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3. Brittleness in leaf and stem (on bottom), and normal type (on top). |
SNPs (43) | Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 17,259,006 | 17,261,770 | ~160K SNPs x 20 accessions (McNally 2... | 6 | Search for SNPs |
| chr3 | 17,259,006 | 17,261,770 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 17,259,006 | 17,261,770 | Huang X, et al, Nat Genetics 2010 Nov... | 18 | Search for SNPs |
| chr3 | 17,259,006 | 17,261,770 | RiceDiversity 44K SNP assay, 34 trait... | 18 | Search for SNPs |
| chr3 | 17,259,006 | 17,261,770 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
