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Browse Ontology Database by:
Trait
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Plant Structure
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Growth Stage
Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
GO:Cellular Component
GO:Molecular Function
GO:Biological Process
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GenBank Accession
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Type:
Not sequenced
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All Species
With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
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Oryza sativa gene "AN3" (GR:0060050)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060050
Gene Symbol
AN3
Gene Name
AWN 3
Synonyms (5)
An5(t)
An3
Awn-3
An3
Awn-3
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
3
Gene Type
Not sequenced
Has Phenotype
yes
Description
Tipped awn. One of triplicate genes controlling awning. The full awn can be produced by the mutual effect of An1 and An2. An3, considered to be weakest in its action, has no remarkable effect upon awn character when An1 or An2 occur independently.
Alleles (1)
An3.1
Germplasm (2)
A31
A42
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (2)
Oryza sativa (2)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
3
76-76cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
JRGP RFLP 2000
BNL6.32
3
92.2-102cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (2)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Hokkaido Morphological 2000
3
76 cM
76 cM
morph-2000-3-13
2
JRGP RFLP 2000
3
92.2 cM
102 cM
jrgp-2000-3-ip22
Associated Ontologies (11)
Trait
awn length
(TO:0000072)
Plant Structure
lemma awn
(PO:0006032)
Plant Growth and Development Stage
whole plant fruit ripening stage
(PO:0007010)
, whole plant fruit ripening complete stage
(PO:0007038)
, inflorescence emergence stage
(PO:0007041)
, whole plant fruit formation stage
(PO:0007042)
Cereal Plant Growth Stage
08-dough stage
(GRO:0007042)
, 06-heading stage
(GRO:0007044)
, 09-mature grain stage
(GRO:0007045)
, 07-milk stage
(GRO:0007046)
Biological Process
multicellular organismal development
(GO:0007275)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
557
Literature (12)
Nagao-S, Takahashi-M., "Type and inheritance of awnedness in rice. -Genetical studies on rice plant. lll-",
J. Sapporo Soc. Agri. Forest.
, 1942, vol. 34(3), pp. 36-42
Nagao-S, Takahashi-M., "Genetical studies on rice plant, IV. Glume color in the cross between the varieties,“Kuromochi and Akage.”",
J. Sapporo Soc. Agri. Forest,
, 1942, vol. 35(3), pp. 1-13
Nagao-S, Takahashi-M., "Trial construction of twelve linkage groups in Japanese rice (Genetical studies on rice plant, XXVII)",
J Fac Agr Hokkaido Univ
, 1963, vol. 53(1), pp. 72-130
Seetharaman-R., "Certain considerations on genic analysis and linkage groups in rice",
Symp Rice Genet Cytogenet, Internatl Rice Res Inst (1963) Elsevier, Amsterdam
, 1964, pp. 205-214
Takahashi-M., "Linkage groups and gene schemes of some striking morphological characters in Japanese rice",
Symp Rice Genet Cytogenet, Internatl Rice Res Inst (1963) Elsevier, Amsterdam
, 1964, pp. 215-236
Sastry-M-V-S., "Linkage studies in rice. -Interrelationship of genes governing brittle culm and awning",
Oryza Cuttack
, 1977, vol. 14(1), pp. 9-11
Sastry-M-V-S, Seetharaman-R., "Inheritance in rice",
Indian J Genet, Plant Breed
, 1980, vol. 40(3), pp. 573-577
Kinoshita-T, Takamure-I., "Inheritance and linkage relationship on zebra chlorosis and zebra necrosis in rice -Genetical studies on rice plant, LXXXVIII",
J Fac Agr Hokkaido Univ
, 1984, vol. 61(4), pp. 445-455
Takamure-I, Yamamoto-T, Kinoshita-T., "Determination of loci for Mi (Minute gain) and Lk-f (Fusayoshi long grain) on the 3rd linkage group in rice",
Japan J Breed
, 1991, vol. 41(Suppl. 1), pp. 322-323
Jena-K-K, Khush-G-S, Kochert-G., "Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O sativa",
Genome ( National Research Council Canada )
, 1994, vol. 37, pp. 382-389
Kurakazu-T, Yoshimura-A., "RFLP mapping of the genes for awn on chromosomes 4 and 5 in rice using the Oryza meridionalis introgression lines",
Rice Genetics Newslett.
, 2001, vol. 18, pp. 28-30
Kurakazu-T, Sobrizal-N, Ikeda-K, Sanchez-P-L, Doi-K, Angeles-R-R, Khush-G-S, Yoshimura-A., "Oryza meridionalis chromosomal segment introgression lines in cultivated rice, O. sativa L",
Rice Genetics Newslett.
, 2001, vol. 18, pp. 81-82
Images (0)
SNPs (0)